Salvelinus namaycush (lake trout): 120020182
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Entry
120020182 CDS
T07522
Name
(RefSeq) integrin alpha-6-like isoform X1
KO
K06485
integrin alpha 6
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04382
Cornified envelope formation
snh04510
Focal adhesion
snh04512
ECM-receptor interaction
snh04514
Cell adhesion molecule (CAM) interaction
snh04518
Integrin signaling
snh04810
Regulation of actin cytoskeleton
snh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120020182
04514 Cell adhesion molecule (CAM) interaction
120020182
04518 Integrin signaling
120020182
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120020182
09142 Cell motility
04820 Cytoskeleton in muscle cells
120020182
04810 Regulation of actin cytoskeleton
120020182
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120020182
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120020182
04515 Cell adhesion molecules [BR:
snh04515
]
120020182
04090 CD molecules [BR:
snh04090
]
120020182
Exosome [BR:
snh04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120020182
Exosomal proteins of breast milk
120020182
Cell adhesion molecules [BR:
snh04515
]
Integrins
Integrin alpha subunits
120020182
CD molecules [BR:
snh04090
]
Proteins
120020182
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_1
Integrin_A_Ig_2
FG-GAP
FG-GAP_3
DUF11
Motif
Other DBs
NCBI-GeneID:
120020182
NCBI-ProteinID:
XP_038819599
UniProt:
A0A8U0TLA5
LinkDB
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Position
25:8222639..8242327
Genome browser
AA seq
1085 aa
AA seq
DB search
MGLRLIQFISYISLLLHLEWTHVSAFNLDTENVIEKKGEPGSLFGFSLAMHWQLNPLDKR
MLLVGAPRAKALRGQKAKITGGLYNCDTASTSSSCSRVQFDDDEDVNTESKENQWMGVTV
NSQGPGGKIVTCAHRYQRRLFVNTAQESRDITGRCYVLSQDLTIGTESDEDGGNWRFCEG
RARGHERFGSCQQGLSATFTRDYHYLVFGAPGAYNWKGVVRVEQKNNTLLEMGFYDDGPY
EVGDENRLDPDLVPVPANSYLGFSLDSGKAITKKGQLTVVAGAPRANHSGAVVLLKKETE
ASTMLSPEHILEGEGLASSFGYDLAVVDLTGDGWEDIVVGAPQFFEKDGEVGGAIYVYVN
KGGDWSKVTPTRIDGPRDSMFGLAVENLGDLNLDGYQDIAVGAPYYDSGSGKVFIYHGSA
QGINIKPAQVLSGVPSETKLFGYSLAGNMDLDRNSYPDLAVGSLSDSVFVYRTRPVISIQ
KVVKTTPKEIDLTKKNCGNSICLEVEACFSYTANPKSYSPRLTVAYSFEAEAERRKKGLP
PRVTFSTRSSDVNDYQSTGVLILSGQGKKECITAKLTLQENIKDKLRGIPIDVTVEIKNS
KRKRRALPELPPILDSNEPITARAEVSFLKEGCGSDNVCQSNVQLQHRFCYREPNKDVFH
PLPVEDGVPVVSLSDQKDIALEITVTNQNGDDAHEAALVASFPPSLSYSASRSAPNADKQ
VICVTNTNGSQADCELGNPFKRGSEATFYIILSTAGISLNTTELEIDLKLETTSDQQNVA
RVKAKAKVVIELLLSLTGVAKPSQVYFTGEVKGESAMKSEGDIGSPIEYEFRVINLGKPL
KTYGSAALIVNWPKETVEGKWLLYLMKIDSRGLEQVTCSPEREINSLTVKEEPSSTRRRR
AIVETDGPQEGTIARLTDKRKYTTLSCEDGAKCVEIRCPLQGLDSNAVILLRSRLWNSTF
LEEYSKLNYLDVIVKASLRVDGAAKNMVLRNAETQVRVTVFPERRAAQYGGLPWWIILVA
ILLGLLLLSLLVFLLWKCGFFRRSKYDYSVPSYNAVRIQKEEKDQLGSLEKKAWITSWSE
NESYS
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgagattgatacagtttatctcatatatttcgcttctccttcacctggaatgg
acgcacgtctcggctttcaacctggacacagaaaacgtcattgaaaagaaaggagagcca
gggagccttttcgggttctctctggctatgcattggcaattaaatccgctggataaaaga
atgttgctggttggtgctccaagggccaaagctctgagaggtcagaaggcaaagatcaca
ggaggactctacaactgtgacaccgcttccacttcctccagctgtagccgagtgcagttc
gacgacgatgaggacgtgaacaccgagagtaaggagaaccaatggatgggtgtaacagta
aacagccaggggccgggaggaaagattgtgacgtgtgcccaccgctaccagcggcgtctg
tttgtgaacacagcccaggagtctcgtgacatcacagggcggtgttacgtgctgagccag
gacctgaccatcggtaccgagtctgatgaggacggagggaactggaggttctgtgagggg
cgggcacgcggccatgagaggtttggttcatgccaacagggtctgtctgccaccttcact
agggactaccactacctggtatttggtgctcctggagcgtacaactggaaaggtgtggtg
agagtagagcagaagaacaacactctgttggagatgggtttctatgacgacgggccctat
gaggtgggcgatgagaaccggttagacccagacctggtccccgtgcccgctaacagttac
ttgggcttctctctggactcggggaaggccatcactaagaagggtcagctgaccgtggtt
gccggtgccccgagagccaatcacagcggggcagtagtgttgctaaagaaggagaccgaa
gcgtccaccatgttgtcaccagagcacatcctggaaggggaggggctggcctcgtcgttc
ggctacgacctcgctgtggtggacctgaccggcgacgggtgggaggacatcgtggtggga
gccccgcagttttttgagaaggacggggaggtaggcggagccatttatgtctacgttaac
aagggcggagactggagtaaggtcacgcccaccaggatagacggacctcgggactccatg
tttggactggccgtagaaaacctgggagatcttaacctggacggctatcaggacatcgct
gtgggagcaccctattatgacagtgggtcagggaaggtgttcatctaccacggctcagct
cagggcatcaacatcaaacctgcacaggtgttgtcaggggtgccatcggagacaaagttg
tttggttattctctagctggtaacatggacctggacaggaactcgtaccctgacctggcc
gtaggatctctctccgactctgtgttcgtctacaggactcggccggtcatcagcatccag
aaggttgtcaagacaacgccaaaggagatcgatctgactaagaaaaactgtggcaacagc
atctgcttggaggtagaggcctgcttctcctacactgccaaccctaaatcctacagcccc
agactgacggtggcgtactcctttgaggcggaggctgagcgtcggaagaagggtctccct
cccagagtgaccttctccacgcggtccagcgacgtcaacgactaccagtccaccggtgtt
ctcatcctcagtggacagggcaagaaggagtgtatcaccgccaagctcacgctacaggag
aacattaaggacaagctcaggggaatccccatcgacgttaccgtggagataaagaactcc
aaaaggaaaagaagagcgctcccagaactcccgcccatcctcgactccaacgagcctatc
acggcccgcgctgaggtgagcttcctgaaggagggctgcggcagtgataatgtgtgccag
agcaatgtacagctccagcatcgcttctgctacagagaacccaacaaggacgtcttccat
ccactacctgtggaggatggggtgccagtagtctcccttagcgaccagaaggacatcgcc
ctggagatcacggtgaccaatcagaatggagatgatgcccatgaggcggcgttggttgcc
tccttccccccctcgctctcctactctgcctcccgctctgcacccaacgcggacaagcag
gtgatctgtgtgaccaatacgaacggctctcaggcagactgtgagctggggaaccccttc
aagcgaggctcagaggcgacgttctacataatcctgagtacagcaggcatctctctgaac
accacagagctggagatagacctgaagctggagacgacgagtgaccagcaaaacgtggcc
agagtcaaggccaaggccaaagtggtgatcgagctgctgctgtccctcacaggagtggcc
aagccctcccaggtctactttactggagaggtcaaaggtgagagcgccatgaagtccgaa
ggagacatcggcagccccatcgagtacgagttcagggtgattaacctggggaagcccctg
aagacttatggcagcgctgccctgatcgtcaattggccaaaggagacggtggaggggaag
tggctcctgtacctcatgaagatcgactccagaggtctggaacaggtcacctgctccccc
gagagagagatcaactcactcaccgtcaaagaggagccgagcagcaccaggagaagacgg
gccatagtggagacagacggacctcaggagggaaccatcgcacgactgactgacaagagg
aaatacactactctgtcgtgtgaggacggggcaaagtgtgtggagattcgctgccccctt
cagggcctggacagtaatgcagtcatcctgctcagatctcgcctctggaacagcacattc
ctggaggagtactccaagctgaactatctggacgtgatagtgaaagcctctctcagagtg
gacggcgctgctaaaaacatggtcctgaggaacgctgagacacaggtgagagtgacggtg
ttcccagagcgtcgtgcggctcagtacggaggactcccatggtggatcatcctggtagcc
atcttgttagggctgctgctgctcagcctgctggtcttcctgctgtggaagtgtgggttt
ttcagacgctccaagtacgactacagcgttcccagttataatgcggtgcggatacagaag
gaggagaaagaccaactgggaagcctggaaaagaaagcctggataacgagctggagtgag
aacgagagttactcttaa
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