Salvelinus namaycush (lake trout): 120020219
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Entry
120020219 CDS
T07522
Symbol
ncstn
Name
(RefSeq) nicastrin isoform X1
KO
K06171
nicastrin
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
120020219 (ncstn)
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Motif
Pfam:
Nicastrin
Ncstrn_small
Motif
Other DBs
NCBI-GeneID:
120020219
NCBI-ProteinID:
XP_038819668
UniProt:
A0A8U0P829
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Position
Sna25:10733413..10748871
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AA seq
709 aa
AA seq
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MGLESSKWAIIFLVCWLYKNVSCNSVEQKIYVELNNTVPCVRLLNATHQIGCQSSISGDT
GVIHVLESEADLEWPLSKGPNPPYMVLLESSLFTRSIMMKMKNESNRVAGVAVVVPNTSP
PEFSPHTTCPNENTGVYSDNYGPNLAHCNTTVWNPLGNGLSYEEFDFPVFSLKEDNETEF
IKQCYLDHNRAVNGSAPQYPLCAMQLFSHMHAVTNTPTCMRRNDINFSINPEMVCDPLGD
YNVWGSIRPYNDTVLGHKENESVVIAAARLDSRAFFWEVSTGAEGSISGFVTLLAAAQAL
REVTHKAPPTRNILFAFFQGVSSFCLPKQVSLETFDYIGSSRMVYDMENGKFVIDLDNVH
SILEIGQVAVHSGTNLFLHSDPVSRSNDTVNDEVENFVKNLQSSTAGLSFLLVEPNVSQP
LPPSSLQRFLRAQPIPGIVLADHESAFNNRYYESFYDNAANLNLTYPSDLSPEEQLEFVT
ETAKSLTDVATVVARALYKQAGGDDSQVNTIKADPKIVTQMLYGFLVSSNNSWFQAVMAP
ELKNILKPSPPEYYVGVVMSSTPTRLVQYLLANLTGAATNLTQSQCQKPDELPNESRQMY
SYLWVQGIVPPNSTQRDSFCVRASVRLTKAVSPAFELGEYASKDYSTWTESRWKFIKARI
FLVASRDLEMLTLGVGVAVLFTSLLVTYFISTKADVLFSSTREPASAAY
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgggtttggaatcgtcgaaatgggctataatattcttagtttgttggctttacaaaaat
gtgagctgtaactctgttgagcagaagatttatgtggagctgaataacactgtaccatgc
gttcgactgctcaatgctacacatcagattggctgccagtcctcgatatcaggtgataca
ggtgtgatccatgtcttggagtctgaggcagatctcgaatggcctttgagcaaaggaccc
aatcctccttatatggttctgttggaatcatccctcttcaccaggtccatcatgatgaag
atgaagaatgaatccaatagggtagctggggttgcagtggtggtcccaaatactagccca
ccagagttctcgccacacacgacatgtcccaatgagaacacaggtgtatactctgacaac
tatggtcctaatttggcacactgtaacactactgtatggaaccctctggggaacggtcta
tcctatgaggaatttgacttccctgtcttctccctgaaagaagacaacgaaacagagttc
atcaaacagtgctacttggaccataatcgcgcagtgaacggcagtgccccgcagtaccct
ttgtgtgccatgcagctcttctcccacatgcacgcagtcaccaatactccaacctgcatg
agacgcaacgacatcaactttagcatcaacccagagatggtgtgtgaccctctgggtgat
tataatgtttggggttccattcggccctataacgacaccgtcttgggccacaaggagaac
gagagcgttgttatagcagcagccaggctggacagcagggcatttttctgggaggtttca
actggagcagagggaagtatctccgggtttgtcactctgcttgctgctgcccaggcactg
cgtgaagtcactcacaaggcccctcccacacggaatatcctctttgccttcttccaaggg
gtcagttccttctgtctccctaagcaagtcagtctagaaacctttgactacattggcagc
tctcggatggtttacgacatggagaacggcaagtttgtgatagacctggacaatgttcac
tcaatactagagattggtcaggtggccgtgcacagtggcaccaacctctttctccactca
gaccctgtgtccaggagtaacgacactgtcaatgacgaggttgagaattttgtgaaaaat
ttacagtcctccacggctgggctcagcttcttattggttgagcctaatgtctctcagcca
ctcccaccctcctccctccagcgtttcctgcgagctcagccaatcccagggattgtgctt
gcagaccacgaatccgctttcaacaacaggtactatgagagtttttacgacaatgctgct
aacctgaacctgacctatccatctgacttgagtccagaggaacagctggagtttgtgact
gaaactgcaaagtcccttactgacgtggctacggtggttgcacgtgctctctacaagcag
gccgggggagacgattcccaagtcaacaccatcaaggcagaccccaaaatagttacccag
atgctgtatgggtttctggttagttccaacaacagttggttccaggcagtgatggcccca
gaactaaagaacattctcaagcccagcccaccagagtactatgttggtgttgtcatgtct
tccactccaactcgtctggtccagtacctcctggccaatttaactggagcagccaccaac
ctcacccagagtcagtgccagaagccagatgagctgccgaacgagagcagacagatgtac
tcctatctctgggttcagggcattgtcccacccaacagcacccagagggattctttctgc
gtacgtgcatcggtacgcctgaccaaagcagtgtcccctgccttcgagctgggagagtat
gcttctaaagactattccacgtggacagaatcacggtggaagttcatcaaagctcgaatt
ttcctagtagcgagccgggacttggagatgctgaccttaggcgtgggagtggctgtgttg
ttcacatccctactggtgacatacttcatcagcaccaaggcagacgtcctcttcagctcc
acgagggaacccgctagcgccgcctattga
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