Salvelinus namaycush (lake trout): 120020259
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Entry
120020259 CDS
T07522
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120020259 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
120020259 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120020259 (thoc1)
03041 Spliceosome [BR:
snh03041
]
120020259 (thoc1)
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
120020259 (thoc1)
Spliceosome [BR:
snh03041
]
Complex C
Other components
EJC/TREX
120020259 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120020259 (thoc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
Stonustoxin_helical
Motif
Other DBs
NCBI-GeneID:
120020259
NCBI-ProteinID:
XP_038819734
UniProt:
A0A8U0TLE6
LinkDB
All DBs
Position
25:complement(12429479..12439742)
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AA seq
657 aa
AA seq
DB search
MSPPILFNFNDAKDTFTAATRSALDNKTSKPLINAFNQITGNETEKKTTLDQALRQVLEE
QIVEKKALVDDFLSLIYLSIDGVTEGICSATTPFLLLGDILDCLPLDQCDKIFSFVEENV
STWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLDNITVFNKNEQESTLGQRPTEEKEDGMEVEEGEMGDEEPGAPAPCSIPIDYNLYRKF
WTLQDYFRNPVQCYEKFSWITFLKYSDETLAVFKSFKLDDMQASKRKLEELRTAGGDHVY
FAKFLTSEKLMDLQLSDSNFRRHILLQYLVLFQYLKGQVKFKSSSCILNDDQCLWMEETT
KLVYQLLKEIPPDGDKFATMVEHVLNTEENWNSWKNEGCPSFVKDRPVDDKPKRPTRKRQ
APEDFLGKGPDRKVFMGNDELTRLWNLNHDNMAACQSESREFMPSLEDFFEEAIEQADPA
NMVENEYKVVHNSNYGWRALRLLSRRSPHFFQPTNQQFKSLADYLESMVIKLAKELPKDL
PSEEIKTGEEDDEDNSDTLLKESNDSPSMQNKLVSNQQMDEIAAKLGAQWKALAGQLEIK
AAEIREIETDSEDVDMQAKLLLVAWQDREGTQATVESLVTALNAAGFPKIADILNET
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctccgatcttattcaacttcaacgatgcaaaagatacatttactgccgcaacc
agaagtgcgttggacaacaaaaccagcaaacctttgataaacgcattcaaccagatcact
ggaaatgagacagagaagaagaccacccttgaccaagctctaaggcaggtcctggaggag
cagattgtggaaaagaaagcactcgtcgatgacttcctgtctctcatctatctcagcatt
gatggagtcactgaaggtatctgctccgccactactcctttcctacttttgggagatatt
ctggactgtctacctcttgatcagtgtgataagatcttctcctttgttgaagagaatgtc
tccacgtggaagtctaactccttctacactgctgggaagaactacctgttaaggatgtgt
aatgatcttttgaggaggttgtccaagtctcagaacacagtcttctgtgggcggatccag
ctgttcctggctcgtctcttccccctgtcggagaaatcaggtctgaacttgcagagccag
tttaatctcgacaacatcacagtgttcaacaaaaacgagcaggaaagcactctaggccaa
aggcccacagaggaaaaagaggatgggatggaggtggaggagggggagatgggagatgag
gaacctggtgcacctgcaccttgttccatccccatcgactacaacctatacaggaagttc
tggaccctgcaggactactttagaaaccctgttcagtgttacgaaaagttctcctggatt
actttcctcaagtattcagatgagacgttggcggtgtttaagagcttcaagctggacgac
atgcaggcttctaagaggaagttggaggagctgaggacagcgggaggagaccacgtctac
ttcgccaagttcctcaccagcgagaagctaatggacctgcagctcagtgacagtaacttc
agacgacacatcctcctgcagtaccttgtcctgttccagtacctcaagggacaggtcaag
ttcaaaagctccagttgtatcctgaatgatgaccagtgtttgtggatggaggagaccacc
aaactggtgtaccagcttctcaaagagatcccacctgatggagacaagtttgccaccatg
gttgagcatgtcttaaacacagaggagaactggaactcgtggaaaaatgagggatgccca
agctttgtgaaggacagaccagtagatgacaaacccaagagacccacgaggaaaagacaa
gctccagaagatttcctgggtaaaggccctgacaggaaggtcttcatggggaatgatgaa
ctcacgagactttggaatctgaaccacgacaatatggcggcttgtcagtccgagagcagg
gagtttatgccttccctggaggatttctttgaagaggccattgaacaggcagacccagcc
aacatggtggaaaatgaatacaaggtggttcataactctaactatggatggcgagccctg
cgtctgctgtccaggaggagtcctcacttcttccagcctaccaaccagcagttcaagagc
ctggccgactacctagagagcatggtcatcaaactggccaaggagctgccgaaggacctt
ccgtctgaggagataaagaccggggaggaagacgatgaagacaacagtgacaccctactc
aaggagagcaacgacagtccgagcatgcagaacaagctggtgtccaaccagcagatggat
gagatagcagccaagctgggtgcccagtggaaggccctggctggccagctggagataaag
gcagcagagatccgggagattgagacagacagcgaggatgtggacatgcaggccaagctg
ctgctggtggcctggcaggaccgcgaggggacacaggccaccgttgagagtctggttaca
gccctcaatgctgctggcttccccaagattgcagacatcctcaatgagacatag
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