Salvelinus namaycush (lake trout): 120020304
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Entry
120020304 CDS
T07522
Name
(RefSeq) desmoglein-1-alpha-like
KO
K07597
desmoglein 2
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120020304
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120020304
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Major cadherins
120020304
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Fibulin_C
Motif
Other DBs
NCBI-GeneID:
120020304
NCBI-ProteinID:
XP_038819801
UniProt:
A0A8U0P8E2
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All DBs
Position
Sna25:complement(16532905..16541767)
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AA seq
1178 aa
AA seq
DB search
MARVETVVILLTFILTFICVVAVESGGLNLRRQKREWIIPPKKLKENVDYTNKEYIAKIR
SDEQYTSRVRYSLTGIGANQQPMNLFTVNPDKGLVRINGILDREETASYHLLGVAKYNNG
TRAEKDIELNIFVEDQNDCSPVFGFGQSGSVNESSATETVVMKVTATDADEVNTLHSQIY
YSIVEKSASNKMFNIDCQTGEILVHRTTLDRETQDTYTLTVKGSDMNGAFGGNTGTAEVV
IKILDINDNIPTLEKESYEGRVEENTVGVEVLRIKAIDLDLMYTENWLSVFTIVTGNEAG
YFNITTDAKTNEGIIWITKALDYEELKVLNLAIRVSNKAEYYFGSSSTSGSIGGGVMGEA
ITGGGKTYPIKINVINQKEGPKFKPTVKVVTISEDSSLVTINKVITTYTAIDSDTLQIAT
NVRYAKIYDEDHWLIIDEKTAEIKLNKLPDRESKYLVNGTYYAKIIAITTDLPSKTATGT
IAIQVEDFNDHCPTLTATTTTMCLGDTAVYVTAVDGDAFPNGAPFKFRVIQDDTKQKWMV
EHLNATTAILRDHAHMWPGHYKVAVEIHDQQGKACADIQILNVVVCTCDQVNKVCFERRT
GTDVTLGAPAILLLLLGLLLLLLVPLLLLFCLCGGAAAIGDFKPIPFDTKEHLIAYHTEG
QGEDKEVPLLNVPVEMEHGPIKTGNVVKYGGNTGFIGRIGAIEGAAGGVSGDGFTSSSMF
TGAHQHYHGFHQPSGRLEVDYGMGGGIMTEHHEHSMFSRLPAGAYDGMALSEEVLEEYYS
AKANHTAQIDQQRDALLIYDYEGQGSPVGSVGCCSLLGADDDLDFLTDLGPKFKTLAQIC
QGSIAMEAETVNVSVSPTHPRPTTSTHTEVSRNALNVNTLNTSVTTSTPLQESLITRDQG
SVTIPRSHIQENVVIPRQTVLIQQPTMYYAAAPTMYMVEPQPQLLLVEQRGGGGYVHSQQ
AAGHVGVGTGQGMVQAGGLHGSRGMLLVEKQMGVGGGGGGHGHVIMGGGQFLQGAGQTIT
GGGHVITETSQTITQGGQILQGAGQTMIGGGHLSPGGSFSQGSRKVLVVESGSGPASAVG
GSAGLWAPQVTLQRGQGSSSTFSSGGHSVEVRGQRGASTLTSSSLCGSMGSNQAPAAAVT
VTTTPMPTAAPRSSSHTTVVQEKKSSVTEKYIETSTIA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtgtagaaactgttgttatattgttgacgttcatactaacgtttatatgtgtg
gtggcagtagaaagcggcgggctgaacctgagaagacagaagagagaatggatcattcct
cctaagaagttgaaggagaatgtagattacacaaacaaggagtacatcgcaaagattcgt
tctgatgagcagtacacgtcaagagtgaggtactcactgaccgggatcggtgcaaaccaa
caacccatgaacttattcaccgtcaacccagataaaggccttgtcagaatcaacggcatt
ctggacagagaggagaccgcttcctaccatttacttggagtagcgaagtacaacaatgga
acccgtgcagagaaggacattgaactgaatattttcgttgaggaccagaatgactgctca
ccagtgttcggttttggccaatctggatccgtcaatgagtccagtgctacagagaccgtt
gtcatgaaagtgactgccacagatgcggatgaagtgaacactctacactctcagatttac
tacagcatagtggagaagagtgcttcaaataagatgttcaacattgactgccagactgga
gagatactggttcacaggactacactggacagagagactcaagacacctacaccctgact
gtaaaaggttcagacatgaacggagcattcggaggaaacacaggaacagcagaagttgtg
attaaaatcctggacatcaatgacaacatccccaccctggagaaagaatcttacgagggc
agggtggaggagaacacggtcggtgtggaagtactgaggatcaaagccattgatctggat
ctgatgtacactgagaactggctgtctgtgttcaccatcgtcacaggcaatgaggccggc
tacttcaacatcactacagacgctaagaccaacgaaggcattatatggataacgaaggca
ctggactatgaggagctgaaagtgctcaaccttgccatacgtgtttccaacaaagcagag
tactactttggctcctcctctacgagtggatccataggaggaggggttatgggagaagct
atcacgggcggtggtaagacctaccccatcaagattaacgtgatcaaccagaaagagggc
cccaaattcaagccaacggttaaagtggtgaccatctctgaggactccagcttggtcacc
attaacaaggttatcactacctacacagccatcgacagcgacacattacagatcgctacc
aatgtcaggtatgccaaaatatatgacgaagaccactggctgatcatcgatgaaaagaca
gcagagatcaagctgaacaaactgcctgatcgggagtccaaatacttggtcaatggaaca
tactacgccaagataatagccatcacaacggatctgccatccaaaacggccacagggaca
atagccatccaggtggaagactttaacgaccactgtcccacgctgacagctacgactacg
accatgtgtctgggggataccgctgtgtacgtcacggctgtggatggggatgccttcccc
aacggagctcccttcaagttcagagtgattcaggacgacaccaaacagaagtggatggtg
gagcacctcaatgccaccactgccattttacgagaccatgcccacatgtggccaggtcac
tacaaggttgcagtggagatccatgaccagcaggggaaggcctgtgctgacattcagatt
ctgaacgtggttgtgtgcacctgtgatcaggtcaataaggtctgcttcgaacgtaggacg
ggcacggacgtcacgttaggagcgcctgccatcctgctgctcctcctgggcctcctgctg
ctgctgctggttcctctcctgctgctgttctgtctatgtggaggagcggcggccattgga
gactttaagcccatcccgtttgacactaaagaacacctgattgcatatcacactgaagga
caaggagaagacaaggaagttcctctcctgaacgttcccgtggagatggagcatggcccc
atcaaaactgggaatgtagtgaagtacgggggaaatacgggattcataggaagaataggg
gcgatagaaggagctgcaggaggcgtgtcaggggacggcttcacctcatcctcaatgttc
acaggagcgcaccaacattaccatggcttccaccagcccagtggcagattagaggtggac
tacggcatgggcggaggaatcatgacagaacatcatgaacactcaatgttctccagatta
cctgctggtgcttacgatgggatggcactctctgaggaagtcctagaggagtactactct
gcaaaggccaatcacactgcgcagatcgaccaacagagagatgccctgctgatttacgac
tatgaaggtcaggggtcaccggttgggtctgtgggctgctgcagcctactgggggctgat
gatgacttggacttcctcaccgacctggggcccaagttcaagaccctggcccagatctgc
caggggtcgatagctatggaggcggagactgtcaatgtgtctgtgtcacccactcatcct
agacctaccacatccactcacacagaggtcagcagaaatgctctcaatgtcaataccctg
aacacctcagtcaccacctccacccccctacaggagagcctgattactcgggaccaggga
tcggtcaccatccccaggtctcatatccaggagaacgtggtgatccccaggcagaccgtc
ctcatccagcagcccaccatgtactatgccgctgcccccaccatgtacatggtggagcct
cagccccagttgttgctggtggagcagagaggaggaggtggttatgtccattcccagcag
gcggcaggccatgtgggggtagggaccggtcaggggatggtgcaggcaggagggctccat
ggttctcggggtatgctgctagtagagaagcagatgggagtgggtggtggtgggggaggc
catggtcatgtcattatgggcggaggccagttcttacagggagccggccaaactattact
gggggaggtcacgttattacagagacgagccaaaccattacgcagggaggccagattcta
cagggggcagggcagaccatgattggaggaggccatctctcgccaggaggaagcttctca
cagggttctaggaaagtgctggttgttgagagcgggtccgggccagcctcggcagtaggg
ggcagtgcaggcttatgggcaccccaggtcaccctgcagagaggccaggggtcgtcctcc
accttttcctcaggtggtcatagtgtagaggtgagaggtcagaggggtgcttccaccttg
acctccagctccctgtgtggctcgatggggtcaaatcaggcccctgctgctgctgtcaca
gtcaccaccacacccatgcccacggctgcaccacgtagcagcagccacaccactgtggtg
caagagaagaaatcttctgtcactgagaaatacattgagaccagtactatagcgtag
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