Salvelinus namaycush (lake trout): 120020375
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Entry
120020375 CDS
T07522
Symbol
smg7
Name
(RefSeq) protein SMG7 isoform X1
KO
K14409
protein SMG7
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120020375 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120020375 (smg7)
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
120020375 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
120020375 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
zf-AD
Motif
Other DBs
NCBI-GeneID:
120020375
NCBI-ProteinID:
XP_038819903
UniProt:
A0A8U0TLE5
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Position
Sna25:24057514..24100519
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AA seq
1137 aa
AA seq
DB search
MNLCAQYLRRQAEALKADMTDFKLGASEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTNTSAIVKPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALAKAVESRDEV
KTKWSVSDFIKAFIKFHGHVYLSKSLEKLNNLREKLEEQFQRLILQKAFSSQQLVHITII
NMFELHHLRDFGNETDDQSFSSEEQIGWFQLLGLFMSFLGVMCSRALLNMNRGEEIMGEC
PLPAIKVSLDWLKLRPTVFQDGAVDRRQYVWPWLVSILNSFQPKEDDVSCTSITPLPEEF
ELQGFLALRPALRTLDFTKGHQGVAVDKEGLPVRARHQRLISLGKWVADNQPGLIQYKVS
DGLLLFITDIEELAIEEPQEKDAPVLQESSNSEQTPNEGNMGLKSVLSMGKTQNSVLEIG
ERPVVTFKENIKPREQSREPSRNHHQKEAGKERRDFGKGNGVPGKGEQKRDGKRKSEVKK
NSHEKAADAGKQVKAQSDMRKMPVSEARKTPVTQTQTTCSSQFIPIHHPGAFPPLPSRQG
FPPPAYVIPPPVAFSMNPGFTFSTGMSVPGPFLQSASHPQQPGAQQQVQVQAGKPSHIPY
SQQRPSVPGAMNQGAPQGQPQQQPSQTMQQVQLQVQALVQQQQSPTKPVQPVQLGKSPPH
HPGMQQYMQVDQAGQMWGQHQAQQHQTQPTMQKMQAMQMPVKQPYYMGSPQEPLKLFEQQ
QYAMQTVPQQNSMDKKMKYPDVKMQDFYWDPSYRMGDNRPMVGERMGKRLPPGAFHPDQD
NTPRGPPFELPNQSRMESGSEVIGQSSSLMPLSGFPIQESSYQNNSIFSQAYGKNMAPNP
KSDAPMLHQEPSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHGSI
PFSNFGPIGTPDNRDRRMVDRWKVEKTPVSGFGLDYLPAASSSSDHRTPENSWHQGNAPS
SSWAAQELPMEDSSTVLLDSLKSIWSSSMMQPGPSALEQLLMQQKQQRGRGTMNPPH
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctgcgcccaatatttacgcaggcaggcagaggccctgaaggctgacatgaca
gattttaagcttggtgcatcagaggtctggacttcaaggcaagcgcttcaggacttgtac
cagaagatgctggtgactgatctggagtatgctttggacaagaaagtggagcaagatctc
tggaaccatgcttttaaaaatcaaataacaacactacagagtcaagccaagaaccgagcc
aaccccaatagaagtgaggtgcaggccaatctgtccctatttctcgaggcagctagtgga
ttctacacacaattactacaggagctgtgtaccgtgttcaacgtggacttgccttgccgt
gtgaagtcatctcagcttggaattatcagcaataaacagaccaacaccagcgccattgta
aaaccccaacccagctcttgctcttatatctgccagcattgtctcgtccacctcggagac
atcgcacggtatcgcaaccaaaccagccaagcggagtcctattacagacacgcagctcaa
cttgtcccttcaaatggtcagccttacaatcagctggccatcctggcctcctctaaaggg
gaccacctcacaacgatattctactactgcaggagcattgccgtcaagttccctttccct
gcagcctccaccaacctgcagaaagctctcgctaaagctgttgaaagccgtgatgaggtc
aaaacaaagtggagtgtgtcagatttcatcaaggccttcatcaagttccatggtcacgtt
tacctgagcaagagcctggagaagcttaacaacctgagagaaaagctggaagaacaattt
cagcggctgattctgcagaaagccttcagctcccagcagctggtccacatcacaattatc
aacatgtttgagctgcaccatctgagggacttcggaaatgaaacagacgaccagagcttc
agctccgaggagcaaatcggctggttccaacttctcggtctcttcatgtcatttcttggt
gtcatgtgtagccgagcactgctgaatatgaaccgaggagaggagatcatgggagaatgt
ccattgccagccatcaaggtgtccctggactggctcaaactacgacctaccgtttttcag
gatggtgccgtggacagacgacagtatgtttggccttggctggtgtccattctgaacagt
ttccaaccaaaggaagatgatgtttcctgtacatcaataactccacttccagaggagttt
gaactgcaggggtttttggctctcaggccagcgctacggacccttgacttcactaaaggc
caccagggtgttgctgtggacaaggagggtctgccagtccgtgcccgtcatcagaggctc
atcagcctggggaaatgggtggcagacaaccagccagggctgattcagtacaaagtcagc
gatggcctgctgctgttcatcaccgacatcgaggaattggccatcgaggaaccccaggag
aaggatgcccctgtgctccaggagtcctccaacagtgagcagacccccaacgagggcaac
atgggcctgaagtcagtcttgtccatgggcaagacccagaacagcgtgttggagatcggc
gagaggcccgtggtgaccttcaaggagaacatcaagccccgggagcagagcagggagcct
agccgcaatcaccaccagaaggaggcagggaaggaacggagggacttcggcaaaggcaac
ggagtgccgggaaaaggagagcagaagagggatggcaagaggaagagtgaggtgaagaag
aacagccatgagaaagctgcagacgcagggaaacaggtgaaagcccagtcggatatgagg
aagatgccagtgtctgaggccaggaagactccagtcactcagacccagactacctgctcc
tcccagttcatccccatccaccacccgggagccttccctccactgcccagccgacaaggt
ttcccccctccggcctatgtgatccctcctcccgtggcgttctccatgaatcccggcttt
accttctctacgggcatgtctgtccccgggccgttcctgcagtcggcctcccaccctcag
cagcccggtgcccagcagcaggtgcaggttcaggctgggaagccgtcgcacattccatac
agccagcagaggccgtcagtgccgggggcgatgaaccaaggggctccccagggccagccc
cagcaacagccttcccagaccatgcagcaggtgcagctccaggtccaggctcttgtccaa
cagcagcagtcacccaccaagcctgtgcagccagtacagctgggcaagagcccacctcac
catccagggatgcagcagtacatgcaggtagatcaggctggacagatgtggggccagcac
caggcccagcagcaccagacccagcccaccatgcagaagatgcaggccatgcagatgcct
gtcaagcagccctactacatgggaagcccccaggaacccctcaagctctttgagcaacag
cagtacgccatgcagacggttccccagcagaacagcatggacaagaagatgaagtacccg
gatgtgaaaatgcaggatttttactgggacccttcctaccgcatgggggataacagaccg
atggtgggcgagaggatgggcaagcggctgccccctggggccttccacccagaccaggac
aacacacccagagggcctccttttgagttgccaaatcagtcaagaatggaaagtggctct
gaggtgattggccagtcgtcttctctcatgcccttatctgggttcccaattcaggagagt
tcctatcaaaacaacagcatttttagccaggcctatgggaagaacatggctcccaacccc
aagtccgacgctcccatgcttcaccaggaaccttctctctactccctgtttgaaggaact
ccatggtccccatcccttcccgccagctcagaccactctacaccagcaagccagtccccc
cattcttccaacccaagcagtttaccctcttctccacccacgcacaaccatggctccatc
cccttctctaacttcggccccataggaacacccgacaaccgagacaggaggatggtcgac
cgctggaaggtggaaaagacgcctgtgagtgggtttggtctggactacctgcccgctgcg
tcgtcatcttcagaccaccgaacccctgagaacagctggcaccaggggaacgcccccagc
agctcctgggccgcccaggagttgccaatggaagactcctccactgtgctcctggacagt
ctgaagtccatctggtctagctccatgatgcagccggggccttcggccctggagcagctc
ctcatgcagcagaagcagcagaggggccggggcaccatgaaccctccacactga
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