Salvelinus namaycush (lake trout): 120020380
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Entry
120020380 CDS
T07522
Name
(RefSeq) LOW QUALITY PROTEIN: deubiquitinating protein VCPIP1-like
KO
K11861
deubiquitinating protein VCIP135 [EC:
3.4.19.12
]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
snh01002
]
120020380
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120020380
Enzymes [BR:
snh01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120020380
Peptidases and inhibitors [BR:
snh01002
]
Cysteine peptidases
Family C64
120020380
Ubiquitin system [BR:
snh04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
OTU
120020380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VCIP135_N
OTU
OTU1_UBXL
Motif
Other DBs
NCBI-GeneID:
120020380
NCBI-ProteinID:
XP_038819912
UniProt:
A0A8U0P7Y0
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All DBs
Position
Sna25:complement(24320179..24326451)
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AA seq
1190 aa
AA seq
DB search
MSLLQGSKKKDKRILSGTCPDPKCQARLFFPAYGSISIECTECGQRHEQNNLLNVEEVTD
PDVVLHNLLRNALLGVTGAPKKGTELVKVMGLSNYHCKLLSPILTRYGMDKQTGKAKLLR
EMNQGEMFDCSLLGDRAFLIEHEHVSTVGYGKDRSGSLIYLHDTLEEIKKANSNKECLIP
VHVDGDGHCLVHAVSRALVGRELFWHALRENLKQNFKQNLDRYKALFQDFIDAAEWEDII
NECDPLFIPPEGVPLGLRNIHIFGLANVLHRPIILLDSLSGMRSSGDYSATFLPGLVPEE
QCKGKDGKFNKPICIAWSSSGRNHYIPLVGIKNTLLPKLPPRLLPKAWGVPQELIKKYIN
LEQDGSCVIAGDRSLQDKYVMRLVNAMEEIFMEKHGIHPSLVADVHQYVYRRTGMIGVQP
EEVTDAAKKSVMENRLHRCLICNALSELHVLPXWLAPSGKLYNLAKSTHGQLRPDKNYSF
PLNNVVCSYDPEKDILIPDYKLSTLNTCNWCHGTSVRHIHGNGSVVYLDGDRTNTRSQGG
KCGCGFKHYWEGKEYDNLPEAFPITLEWGGRVVRETVYWFQYEVEVTLNSNVYDVAMKLV
TKHFPGEFGSELLVQKVVNTILHHTAKKNPDEYNPVSIDGAHAQRLTDVVETQQAVDTQP
PTKIILTGQKSKTIHKEELTMSKAERSLQQSISEQALVTQKRRTDRLKQEQKGVQGHGRP
SSPSAAQEPSSSAPATPTKSSFSPTSSKEKKIRVTTSDGRQAMLTLQAQTTFSELQRSIA
NEFIVSPAQQCIRHGFPPKELLPPKDGEENEPVALQHGDRVTVEILRGPEDHKVSAPSAS
SSHSSLHSLHSVKSDDPVTSSRMNTSRELQENIDLEMSSLCLLATLMGEEVWSYAKKLPH
LFQQGGVFFNIVKKDMGLMDGKHCTLPHLTGKTFVYNAAEECLELCVDAAGHFPVGPDVE
DLVKEALVQLRSEAASRSREGSPSHSLLRLGSGGVVRKKEQLQSVNAFQGKGHSLGSAPG
GSHPEHKPITRQHSSGVDLSSSVSKGPDLSDISEDATKELVRMAPGFVTMKDSRHLDPSM
IEEQRKKLQEMVSSIQASMDRHLREQSNAGAGTGGPAERTSGAKMSASQSAPEVGDQEAS
SMDVSTAGAHGTPVKAGNKPDGKDAGSEELEEMDSQDAEHTNALEPMDHS
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgctacaaggctcaaagaaaaaggacaagcgtattttgtccggtacctgccca
gacccgaaatgccaggcgaggctattcttccctgcttacggctcgatcagcattgaatgc
actgaatgtggccaacgccacgaacagaataatcttttaaacgtggaagaagtaactgat
ccagacgttgtactgcacaatttgttaagaaatgccctactcggtgtcactggagcccca
aagaagggaaccgagctggtgaaagtgatggggctttccaactaccattgcaagctcctc
tctcctattctcacaaggtatggaatggataagcagacgggaaaagcgaaactgctgagg
gaaatgaatcaaggagagatgttcgactgctcacttctaggtgatcgggcgtttctaatc
gaacatgagcatgtatctacagttggctatggcaaggacagatccgggagcctgatatac
cttcacgacactttggaggagattaagaaagctaacagcaacaaagaatgcttaattccc
gttcatgtggatggagatggacattgccttgttcatgctgtgtccagggccctggtaggc
agagaactgttctggcatgccttaagagagaatttgaaacagaatttcaagcaaaatctg
gatcgctacaaggcactctttcaggattttattgatgcagctgaatgggaggacatcatc
aacgaatgtgaccccctttttatcccaccggagggtgtgccactgggacttcgaaacatt
cacatatttggcttggctaatgtgctgcaccgccccataatcttgttagattcactgagt
ggaatgaggagctctggggattactctgcaacttttctccctgggcttgtaccggaagag
cagtgcaagggaaaagatggaaagttcaacaagcctatatgcatcgcctggagtagctct
gggcgtaaccactacatccctcttgtcggaataaaaaacaccctccttcccaaactgccg
ccgaggcttctccccaaagcttggggggtcccgcaggagctcatcaagaagtacattaat
ttggagcaagacgggagctgcgtcatcgccggagacaggagcttacaagacaagtatgtg
atgagactggtcaatgccatggaggagatcttcatggagaagcatggaatccacccctcc
ctggtggcagacgtgcatcagtacgtttacagacggaccggtatgatcggcgtccaaccc
gaagaggtgacggatgctgccaagaaatcagtcatggaaaaccggctacatcgctgtctg
atctgcaatgcactctctgagcttcatgttctacctnngtggctggctccaagtggtaag
ctctacaacctggctaaatccacccacgggcagctcagacccgacaagaactacagcttt
ccgttgaacaatgtggtctgctcttacgaccccgagaaagacatcctcattcctgactac
aaactaagcaccttgaacacctgcaactggtgccacggcacctcagtgcggcacatccat
ggcaacggctctgtggtgtacttagatggagacagaaccaacacccgctcccaggggggg
aagtgcggctgcggcttcaagcactactgggagggaaaggagtacgacaatctgccagag
gctttccccatcactctggagtggggtgggcgtgtcgtgagggagacagtgtactggttc
cagtatgaggttgaggtgaccctgaacagcaacgtctatgatgttgccatgaaactggtt
accaagcatttccctggggagtttgggagtgagctcctagtgcagaaagtggtgaacacc
attttgcatcacactgccaagaagaacccagatgagtataacccagtctccattgacggt
gcgcatgctcagagactcacagacgtggtggaaacccagcaggctgttgacacacagcca
ccgactaagatcatactaactgggcagaaatcaaagaccattcataaagaggagctgacc
atgagtaaagcagagcggagccttcagcagagcatcagcgaacaggccctagtgacccag
aaaaggaggacagatcgactgaagcaagagcagaagggagtccagggacatgggcggccg
tcctctccgagtgctgctcaggaaccttcctcctccgctccagccacgcccaccaaatct
tccttctcccccacttccagtaaggagaagaagatccgtgtcaccactagcgacgggcgg
caggccatgctcactctacaggctcaaaccaccttttctgagctccagaggagcattgcg
aacgagttcattgtgtctccagcccagcaatgtattcgacatgggtttccccccaaagaa
cttttgcctcccaaggatggagaggagaatgagcctgtggctctccaacatggggacagg
gtgactgtggagatcctgagaggtccagaggatcacaaggtttctgccccaagtgcttcc
agttcccattcatcccttcattccctccactctgtgaagagtgatgatccagtgacttcc
agcagaatgaatactagcagagagctgcaggagaacattgaccttgagatgtcctccctc
tgtctcctagcaaccttaatgggagaagaagtctggtcatatgcaaaaaaactgcctcac
ttattccagcaaggtggagttttcttcaacattgtgaagaaagatatgggcctgatggat
ggcaagcactgcaccctcccacacttgactggaaagacgtttgtgtacaacgcagcagag
gagtgtctggagctgtgtgtggatgcagcggggcacttccccgtgggccctgacgtggag
gacctcgtcaaggaggccctggtgcagctccgctctgaggctgcctccaggagtcgggag
ggaagcccctctcacagcctgctgaggctcggaagtggaggtgtggtgcgcaagaaggag
cagctccagagtgtcaatgccttccaaggtaagggccactccctgggcagtgccccaggc
ggctctcaccctgaacacaagcccatcacccgccagcacagcagcggggtggacctgagc
tccagcgtctcgaagggacccgacctctctgacatctcagaagatgcaaccaaggagctg
gtgcgcatggctcctggtttcgtcaccatgaaagacagccgacacctagaccctagtatg
atcgaagaacagaggaaaaaactacaggagatggtctcatccatccaagcctccatggac
aggcacctgagggagcagagcaatgcaggagcaggcactgggggccctgcagagaggaca
agtggggctaagatgagtgcttcccaatctgccccagaggtaggtgaccaggaagcctct
tctatggacgtatctactgctggtgctcatggcacaccagtgaaggcagggaacaagcct
gatggaaaggatgcagggtcagaggagctggaggaaatggatagccaggatgcagagcat
accaacgccctggagccgatggatcattcctga
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