Salvelinus namaycush (lake trout): 120020421
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Entry
120020421 CDS
T07522
Name
(RefSeq) 5'-3' exoribonuclease 1-like isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03008
Ribosome biogenesis in eukaryotes
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120020421
09123 Folding, sorting and degradation
03018 RNA degradation
120020421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120020421
03009 Ribosome biogenesis [BR:
snh03009
]
120020421
03016 Transfer RNA biogenesis [BR:
snh03016
]
120020421
03036 Chromosome and associated proteins [BR:
snh03036
]
120020421
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120020421
mRNA degradation factors
5'-3' decay
5' exonucleases
120020421
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
Pre-60S particles
RNases
120020421
Transfer RNA biogenesis [BR:
snh03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
120020421
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120020421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
120020421
NCBI-ProteinID:
XP_038820003
UniProt:
A0A8U0P7E2
LinkDB
All DBs
Position
Sna25:27954130..27985378
Genome browser
AA seq
1700 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
VLPSEARFDSNCITPGTDFMARLQEQLKYFVNSKLSTDNAWKGVNVYLSGHETPGEGEHK
IMEFIRWENTKPDHDPNTRHCLYGLDADLMMLGLTSHEPHFSLLREEVRFGGKKNQKRIT
APEETTFHLLHLSLFREYIDYEFSEVKNKISFEYDLERIIDDWILMGFLVGNDFIPHLPH
LHINHDALPLLYRTYISVLPTLGGYLNENGHLNLGNFEKYLEKLSEFDREHFNEVFVDLK
WFESKVGNKYLNEAAGLAAEEAHCKDSRKKDLKDSLCLAALDEVKDRGPSRGFEEEGEEE
DMFEAEFRQYKRTYYMTKMGVEVVSDEFLANQALCYVEGIQWILHYYYHGVQSWSWYYPH
HYAPFLSDVRNIAHLKLTFDMGKPFMPFQQLLGVLPSASKDLLPQSYRHLMTSENSSIIE
YYPLDFKTDLNGKQQEWEAVVLIPFIDERCLLAAMEPYNDHMTKAEKARNCHTQCAVYSY
DAELDYPSTLPDLFPNIMHCHVRVTPVPMDAWHVSLSHVGRSINSSQFYFCGFPTLKHIR
HKFYKKKHGVVVFQQSSRGENMMLEIIPSKEEPVCDNVASQVLGRSVFVNWPHLEEARVV
AVSDGESKFFLEEPAGMQKLYDRDSPPPTKVTYLSDKEQKDWVKDVQGITEHFGKRKGIT
VNETAVVLYTQLLTGRKYVPGQSGQVHLEKQWAKQILPFPYQTIVKDIKAFDSSSTRFKT
LEELYSPTTTVFMVGNPYYGAMGEVQDSSDVIKEGRVRVVFTVPCEPPMESLIQNQHKYC
VKYSPGYVLASRLGITGYLVSRFSGSIFVGRGSKKNPHGEQKANVGLNLKFNKKNEEVPG
YTKRTEKEWLYSVAVEDLMAEYLDRFSEVFDLVSRNSHDDVFYEDDIWPGVDQNGAERVK
EITSWLKTHPVADIARASCDLQILDTAIVEQIEEVVAKVKKSSKKVRVTVKPHLLFRPLE
QQHGVVPDPDAEYHLFDRVVNVRESFSVPLGLRGTIIGIKGADREAEVLYEVVFDEEFAG
GLTIRCASGRGYRLPPCALINLSHGCRFEQGSHKLTAIVKPQPSSHHHAHNKELSGLNHS
PRSPFIPTPQQNGRQNILRADTQGNKNVHHNALSQKHQPKGKDEEFSNVWQSLQSSGMPQ
KPPAHWQQNNACNSAWGPGSPGQEGQFQGQQGRNQPQSQQQPPKPGPAGSIRLLKRNEDV
NTLFPAQNATKKQTEFEDLIANLKITKGNEPTAPPPGNEPTSQSEEPLSPQSFAMKGTLA
LKEMLNIGSAPDSTSLSSSNTQQQNRRRATKKVAARMGDLVLPVAAAAVPPLQAHQPSSM
GPSVASELARICIGLGMAPPDFTFIRSRQGLMVCQVKLSSGLLVHGPQSHSENEAKEKAA
LFALQRLVSVNSVGSGFPMPPPLFSGVGQIRGPPMGPMPNVFGQSGGLLIPPQGYGPLHW
GMPHQGQPFYGGTFPGSRPQTPSVPIGSHNQFVPLQVTKKRVSSGKKPQEFYNAAHTARN
QAPINKAQSDSQPSLSPTPSAAPITPPKTAQDPPEMAGTPSTPQTPRQNPTPGHGHTPSS
ASKRKHRKLAVNFEVAKVQE
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccaaaattctaccgatggatttcagagcgatacccttgcctgagtgaagtt
gtcaaggaacatcagattccagagtttgacaacctctacctggatatgaatggcatcatc
caccagtgctcccacccaaatgacgaggacgtccacttccgtatctcggaggagaagatc
tttgcagacatcttccactatctggaggtgctgttcaggatcatcaagcccaggaaggtg
ttcttcatggccgtggatggggtggctcctcgggccaagatgaaccagcagagaggcagg
agattcaggtcggccaaagaagcagaggacaagataaagaaggccctagagaaaggagag
gtcctaccctctgaggcccgctttgactctaactgtatcacacctgggacggacttcatg
gccaggttacaggagcagctcaagtactttgtcaacagtaaactgtccacagacaatgcc
tggaaaggagttaacgtctacctttctggacacgagactccaggagaaggagaacataag
atcatggagtttatccgctgggaaaacaccaagccagaccacgacccaaacacacgccac
tgtctctatggcctggacgctgacctgatgatgttaggtctgacgagccacgagccacac
ttctccctactcagagaagaggtccgctttggagggaagaaaaaccagaaaagaataact
gctccagaggagacaaccttccacctactgcacctgtcactatttagggagtacatagac
tacgagttctctgaagttaagaataagatctcatttgagtacgacctggagcgaatcata
gatgactggatcctgatgggctttcttgttggaaatgacttcatccctcatcttcctcat
cttcacataaaccacgacgccctgcctcttctctaccgcacctacatcagtgtgctgcca
acactaggaggatacctgaatgagaatggtcacctgaacctgggtaactttgagaagtac
ctggagaaactgtcagagtttgacagggagcacttcaatgaggtgtttgtggatctgaag
tggtttgagagtaaggtggggaacaagtacttgaacgaggcagcagggctggcagcagag
gaggctcactgcaaggattccaggaagaaagacctgaaagactctctgtgtctggctgca
ctggatgaggtcaaggacagaggccccagcagaggttttgaggaggaaggggaggaagaa
gacatgtttgaagcagagttccgacagtacaaacgcacctactacatgaccaagatggga
gtggaggtggtctcagatgagtttctagccaaccaggcgttgtgctatgtggagggaatc
cagtggatcctacattactactaccatggagtccaatcctggagctggtattacccgcac
cactatgcccccttcctgtcagatgtgcggaacatagcccatctgaagttgacctttgac
atgggcaagcccttcatgcccttccagcagctgctgggagtcctaccttctgccagcaaa
gacctgctgccccagagctataggcacctgatgacatcagagaattctagcatcattgag
tattaccctctagacttcaagacagaccttaatgggaaacaacaggagtgggaggctgtg
gtgctcatccccttcatcgacgagagatgtttgcttgctgcgatggagccttataacgat
cacatgaccaaggctgagaaggcccgtaactgccacacacagtgtgctgtgtacagctac
gacgctgagctagactacccctccaccctgcctgacctgttccccaacatcatgcactgc
catgtcagagtgacaccggttcccatggacgcttggcacgtgtcgttgagccatgtgggg
cgcagcatcaacagcagccagttctacttctgtggcttccccaccttaaagcacatcaga
cacaagttctataagaagaaacatggagtggtggtgttccagcagagcagccgaggagag
aacatgatgctggagatcatacctagcaaagaggaacccgtgtgtgacaatgtggcctct
caggtcctgggtcggtctgtgtttgtcaactggccccacctagaggaggccagggtggta
gcagtgtctgacggggagagcaagttcttcctggaggagccggcagggatgcagaagctg
tacgacagggactctcctccccccactaaggtcacctacctcagtgacaaggaacagaag
gactgggttaaggatgtacagggcatcactgagcatttcggtaagcgtaagggcatcacg
gtgaatgagacggcggtggttttgtatacccagctgctgacgggcaggaagtatgtacct
gggcagagcggacaggtgcacctggagaaacagtgggccaagcagatactgccattcccc
taccagaccatcgtcaaggacatcaaagcctttgactcgtcgtccactcgcttcaagacc
ctggaggagctgtattccccgacgaccacggttttcatggtggggaacccctactacggt
gccatgggagaggtgcaggattccagtgatgtcatcaaagagggacgggtgcgggttgtg
ttcacggtgccctgtgaaccacctatggaatccttaatacagaaccagcataaatactgt
gtgaagtacagtcctggctacgttctggcctcacgcctcggcatcactggctacctcgtc
tccagattctctggcagcatcttcgtcggcagaggatccaagaaaaatccccatggggag
cagaaggctaacgtgggtctgaacctgaagttcaataagaagaatgaggaggtaccaggt
tacaccaagagaaccgagaaggagtggctctattctgtcgctgtggaggatctgatggct
gagtacttggataggttctctgaggtgtttgacctggtgtccaggaacagtcacgacgat
gtcttctacgaggacgacatctggcccggagtggaccaaaacggggcggagagggtgaag
gagatcacttcctggttgaagacccacccagtcgccgacatcgcccgggcatcatgtgac
ctgcagatcctggacacggccatcgtggagcagatcgaggaagtggtggctaaggtcaag
aagagcagcaagaaagtgcgtgtgaccgtgaagccacatttactcttcaggcccttagag
cagcagcacggtgtggtccctgacccggatgcagagtaccacctgtttgaccgggtggtc
aatgtcagagagagcttctctgtccccctcggcctcagaggaaccatcatcggcatcaag
ggagctgatcgggaggctgaggtcttgtatgaggttgtgtttgatgaagagtttgctggg
ggacttacaatcaggtgtgcgtcgggccgtggctacaggctgcctccgtgtgccttaatc
aacttgagccatggatgccgctttgagcagggttcccacaaactgaccgccatcgtcaag
ccccagccctcctcccaccaccacgcacacaacaaagagctgtctgggctcaaccactca
ccacgctcacccttcatacccacaccgcagcagaacggcagacaaaacattctcagggca
gacactcaggggaacaaaaatgtgcaccacaatgccctcagccagaaacaccagccgaag
ggtaaagatgaggagttcagtaatgtgtggcagtctctgcagagttctggaatgccccag
aaaccaccagcccactggcaacaaaacaatgcgtgtaattctgcctggggtccagggtct
cccggacaggaagggcagttccaggggcaacagggcaggaaccaaccccagagtcaacaa
caaccccccaaacctggcccagcaggaagtatcagactgctgaagagaaatgaagatgtc
aacactctgtttcccgctcagaacgccacaaagaagcaaacagagtttgaggacttgatc
gccaacctgaagatcaccaagggcaacgagccaactgcaccgcctccaggcaacgagcca
acgagccaatcggaggagccgctgtctccgcagtcattcgctatgaaggggactctggcc
ctgaaggagatgctgaacattggctctgcccctgactccactagtctctcctcctccaac
acacagcagcagaacaggagaagagccaccaagaaagtggcggcgaggatgggagactta
gtgttacctgtggccgcagcagcagtccctcccctgcaggcccaccagccctcctccatg
ggtcccagtgtggcctcagagctggctaggatctgtataggtctgggcatggccccacct
gacttcaccttcatacgcagcagacagggtttgatggtgtgtcaggtgaagctctccagt
ggtctgcttgtccacggtcctcagagtcactctgagaatgaagccaaagagaaggcagct
ctcttcgccctgcagcgccttgtgagtgtgaattcggtgggttctgggtttcccatgcct
ccgcctctgttctccggggtcggccagataagaggaccgcccatgggacccatgcctaac
gtattcggccaatcaggtggtctgttaatccctcctcaggggtatggtcctctccactgg
ggcatgccccaccagggacagcccttctacggtggcaccttccctggctcccggccccag
acaccctccgtccccatcggctcacacaaccagtttgtccccctgcaggtgactaagaag
cgtgtgtcatcaggcaagaagccacaagagttctacaatgcggctcacacggcgagaaac
caagctccaattaacaaagctcagtctgactcccaaccctccctatccccgaccccctcg
gcagcccccatcacacccccaaagaccgcccaggacccccctgagatggctgggaccccc
tccacgccacagacgccacgccagaaccccaccccaggccatggccacacccccagctct
gcctccaagaggaaacacaggaaactggcggtcaacttcgaagtggccaaagtccaagaa
tga
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