Salvelinus namaycush (lake trout): 120020469
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Entry
120020469 CDS
T07522
Symbol
copb2
Name
(RefSeq) coatomer subunit beta' isoform X1
KO
K17302
coatomer subunit beta'
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120020469 (copb2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120020469 (copb2)
Membrane trafficking [BR:
snh04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
120020469 (copb2)
Exosome [BR:
snh04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
120020469 (copb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_WDR75_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_LRRK2
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
120020469
NCBI-ProteinID:
XP_038820093
UniProt:
A0A8U0P7L3
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All DBs
Position
Sna25:complement(30463857..30483722)
Genome browser
AA seq
941 aa
AA seq
DB search
MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RASKFVARKNWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWEKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVCGLRGSNNVALGYDEGSIIIKLG
REEPAMSMDTSGKIIWAKHSEVQQANLKAMGDTEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAHDSSEYAIRESNSVVKIFKNFKE
KKSFKPDFGAEGIYGGFLLGVRSVNGLAFYDWENTELIRRIEIQPKHIFWSDSGELVCIA
TEDSFFILRYLSEKVASSQENNEGVTEDGIEDAFEVQGEIQEVVKTGLWVGDCFIYTSSV
NRLNYFVGGEIVTIAHLDRTMYLLGYIPKDDRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFGMADKVLPTIPKEQRTRVAHFLEKQGFKQQALAVSSDSEHRFELALQLGELKIAYQL
AVEAESEQKWKQLAELAISKCQFSLAQECLHHAQDYGGLLLLATASGNAAMVGKLAEGAE
RDGKNNVAFMTYFLQGKLDHCLELLIRTNRLPEAAFLARTYLPSQVSRVVKLWRESLAKV
NQKAAESLADPTEYENLFPGLKESFVAEQFLRETCLGNSRPATDYPLITPNEERNILEEA
TGYEPKGAPLSLATPVLQAEDSGEETMPAAGVMASVLAAVVAAAMIPSEAEPEVAPEEES
PSSSESQKDKVLDELEDDLDNMELDDIDTSDINLDEDFLDD
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcaggctggacatcaagcggaagctgacagcccggtcagaccgcgtgaagagc
gtggacctccacccgaccgagccgtggatgctggccagcctgtacaatggtagtgtctgt
gtctggaaccacgaaacacagaccttggtgaagaccttcgaagtgtgtgaccttccagtg
agagcatcgaagtttgtagccaggaagaactgggtcataaccggcgcggatgacatgcag
atccgtgtgttcaactacaacaccctggagagggtccacatgtttgaggcccactctgac
tacatccgctgtatcgccgtgcatcccacccagccctacatcctcacaagcagtgacgac
atgctaatcaagctgtgggactgggagaagaagtggtcttgcagtcaggtgtttgagggc
cacacccactacgtcatgcagatcgtcatcaaccctaaagacaacaaccagtttgccagc
gcttctctggacagaaccatcaaggtgtggcagctgggctcctcctctcctaacttcact
cttgagggccatgagaaaggagtcaactgcattgactactacagcggaggggacaagccg
tacctcatatcaggtgctgatgaccgtctggtcaagatttgggactaccagaacaagacg
tgtgtgcagaccctggagggccacgcccagaatgtgtcgtgtgtcagctttcacccagag
ctgcctatcatcatcacaggctcagaggacggcactgtgcgtatctggcactcgagtacg
taccgtctggagagcacgctgaactacggcatggagcgcgtgtggtgtgtgtgtggcctg
agaggctccaacaacgtggcgctgggctacgacgaaggcagcatcatcatcaagctgggg
cgtgaggagccagccatgtccatggacaccagtgggaagatcatctgggccaagcactcg
gaggtgcagcaggcaaacctgaaggccatgggcgacacggagatcaaggatggagagagg
ctgccgctggccgtcaaagacatgggcagctgtgagatctacccccagaccatccagcac
aaccccaacggaaggtttgttgtggtgtgtggagacggagagtacatcatctacactgcc
atggccctgaggaacaagagcttcggctcagcgcaggagtttgtctgggcacacgactcc
tccgagtatgccatcagggaaagcaacagtgtggtcaaaatcttcaagaacttcaaggag
aagaagtctttcaagccagactttggtgctgaaggtatctatggaggctttttgctaggc
gtcaggtcagtgaacggtctggccttctatgactgggaaaacacagagctgatccgccgc
atcgagatccagcccaaacatatcttctggtcagactcaggggagttggtgtgtatagcc
acagaggattccttcttcatcctgcgctacctgtcagagaaagtagcctcctcccaagag
aacaatgagggagtgaccgaggatggcatcgaagacgcctttgaggtccagggggagatc
caggaggtggtgaagacaggcctatgggtgggagactgcttcatctacaccagctctgtc
aacagactcaactactttgtggggggagagattgtcaccatcgctcacctggacaggacc
atgtacctcctgggctacatccccaaggacgaccgcctgtacctgggcgacaaggagctg
aacatcgtcagctactccctactggtgtctgtgctggagtaccagacagctgtgatgcgc
cgggactttggcatggccgacaaagtgctgcccaccatccccaaggagcagaggacccgc
gtagcacacttcctggagaaacagggcttcaagcagcaggctctggccgtgtcatcagac
tcggagcacaggtttgagcttgctctgcagctgggggagctgaagatcgcctatcagctg
gctgtggaggcagagtcggagcagaagtggaagcagctggcagagctggccatcagtaag
tgccagtttagcctggcccaggagtgccttcatcacgcccaggactacggcggcctgctg
ctgctggccaccgcctcgggcaacgccgccatggtgggcaagctggccgagggcgccgag
cgggacggcaagaacaacgtggcattcatgacctacttcctgcaggggaaactggaccac
tgtctggagctgctgatccggaccaaccggctgcccgaggcggccttcctggcccgcacc
tacctacccagccaggtgtccagagtggtcaagctgtggagggagagcctggccaaggtc
aaccagaaggcggctgagtcactggccgaccccactgagtatgagaacctgttccccggg
ctgaaagagtcgttcgtggccgagcagttcctccgtgagacctgcctgggcaactcccgg
ccggccaccgactaccctctcatcacgcccaatgaagaacgtaatatactagaggaggcc
acaggctacgagcccaaaggagctccactctccctcgctacaccggtactgcaggctgaa
gacagcggcgaggagaccatgccggctgcaggtgtgatggcgtccgtgttggcggcggta
gtggctgcagccatgatcccttcggaggcagagcctgaggttgcacctgaggaggaaagc
ccaagctcatctgagtcacagaaggacaaggtcctggacgaacttgaagacgacctggac
aacatggagctggacgacattgatacctcggacatcaacctggacgaagacttcctagat
gactga
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