Salvelinus namaycush (lake trout): 120020740
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Entry
120020740 CDS
T07522
Name
(RefSeq) cadherin-4-like
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
120020740
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120020740
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Major cadherins
120020740
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Cadherin_4
SH3_Tf2-1
Fibulin_C
Chromo
Stevor
DUF4064
DUF5385
Motif
Other DBs
NCBI-GeneID:
120020740
NCBI-ProteinID:
XP_038820407
UniProt:
A0A8U0P8V4
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Position
Sna2:24153401..24557815
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AA seq
1002 aa
AA seq
DB search
MKNLHRQKLSPRFVGPLKVLRRVNEVTPVAAGPLASAGPHDAPPPPLAIEGAPAYSVRSL
LDSQHRGGSLQYLVDWEGYLDRSLIRDFHRHRPGTKAGQPPTPTCRPGFSESFYTVFVSR
DLLQGQSILKDTSLSSERVKFEDCQHSKAGGFESSDPNFSVRPDGSVYAEQEVGNLSEPI
QFMVTARGGHDPHIWETTVKLALVGHQPSVPVSQVNIYTLLSFTLHYHYSNPRVIKFPQK
HQKSSSANGLRRQKRDWVIPPINVPENSRGPFPQMLVRIRSDQDLEKGIRYSITGAGADQ
PPIDVYNIDPVHGKMFVTRPLDREERASYHLRAHAVDMNGNKVESPIDLYIYVIDMNDNR
PEFQNQVYNGSVAEGSKPGTLVMQVTANDSDDDTTANGMVRYRILSQTPHMPIPNMFTIN
SETGDIFTMAAGLDREKVSQYIIIVQATDMEGNLNFGLSNTATALISVTDINDNPPELTA
RTFSGEVPENSVNVVVANLTVIDRDQPHSHNWAAQYRIASGDPQGHFLIRTNPVNNDGMV
TVVKPVDYEQNRAFMLTVIVSNKAPLASGIQSSLQSSAGVTISVQDVNESPVFPTNPKSI
RFEEGVPAGTTLTVFAAQDPDLFIQQTVRYSKLSDPSNWLRINRTNGQITTMAVLDRESM
YVRNNIYEATFLAADNGSPPASGTGTLQIHLIDVNDNAPVMMPKEAQLCERANPRSKVNI
TASDADADPHVGPFVFELPSYPSSVRRNWTISRISGDYAQLRLRIPYLDAEVYDVPIIVS
DSGNPPLSNRSIIKVKVCPCDDNGDCTTTGAVAASGLGTGAIIAILICIIILLILVLVFV
MWMKRREKERQAKPLLIDPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPESVEHIISKP
VGVRRVDERPIIAESQYPVRPSLPHPGDIGDFINDGLRAADNDPTAPPYDSLLVFDYEGS
GSTAGSVSSLNSSSSGDQDYDYLNDWGPRFKKLADLYGGGDD
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacctgcaccgccagaagctgagcccgcggtttgtggggccgttgaaagtcctg
aggagagtcaatgaggtgacgccggtggcagctggtcccttggctagtgctggaccccac
gacgcacctccccctcccttggccatcgagggggccccggcgtactctgtccgcagcctg
ttggactcacaacatcgtggggggtctctccagtacctggtcgactgggaggggtacctg
gaccgttctctcattcgcgacttccacaggcatcgtcccgggaccaaggcaggacaacct
cctacacccacatgcagaccaggcttctctgagagcttctacactgtgtttgtctcgagg
gatctactgcaaggccagagcattctcaaagacaccagcctatcgagtgaacgtgtgaag
tttgaggactgccagcacagtaaagcggggggcttcgagagcagtgaccctaacttcagt
gtgcgccctgacggctcggtgtacgcggagcaggaggtgggcaacctgtcagaaccgatc
cagttcatggtgaccgcccgcggaggtcatgaccctcacatctgggagaccacggtcaag
ctggccttggttggacaccagccctctgtccctgtgagtcaggtaaacatatatacactg
ctatcatttacactgcattatcactactctaatcccagggttatcaagtttccacagaaa
catcaaaaaagctcctctgccaatggactgagacgacagaagcgggactgggtcatccca
ccaatcaatgtgcctgaaaactccagaggacccttcccacaaatgcttgtcagaatccgc
tcggaccaggacctggagaaagggatacgctacagcatcactggagcaggggcggaccag
cctcccattgatgtgtacaacatcgaccctgtgcacggcaagatgtttgtcaccagaccc
ctggacagagaggagagggcctcctaccatctgcgggcccatgctgtggacatgaatggg
aacaaggtggaaagccccatagacctatacatctacgtcatcgacatgaatgacaaccgg
ccagagttccagaaccaggtctacaatggctctgtggctgaaggctcaaagccaggcacg
ttggtgatgcaagtgacagccaacgactcagatgacgacaccacagccaatgggatggtg
cgctaccggatcctgtcccagaccccccacatgcccatccccaacatgttcaccatcaac
agtgagacgggagacatcttcaccatggctgctggcctggatagggagaaagtgtcccag
tacatcatcatcgtccaggccacggacatggaggggaacctgaactttggcctgtccaac
acggccaccgccctcatctctgtgaccgacatcaacgacaaccctcccgagctgaccgcc
aggacgttttcgggggaggtcccagagaacagtgtgaatgtggtggtggccaacctgaca
gtgattgacagggatcagccccacagccataactgggctgcccagtaccgcatcgccagc
ggagacccccagggtcactttctcatccgcaccaaccctgtcaacaacgacggcatggtc
actgtggtcaagccggtggactatgagcagaacagggccttcatgctgactgtgatagtc
tctaacaaggcccccctggccagtgggatccagtcttctctccagtcttcagcgggggtc
accatctccgtacaggacgtcaatgaatcccctgtcttccccaccaaccccaagtccatc
cgttttgaggagggtgtccctgcaggcaccacactcaccgtgtttgctgcccaagaccct
gacctcttcatccagcaaactgtcaggtactccaagctgtctgacccctctaactggctg
aggatcaacaggaccaatggtcagatcaccaccatggctgtgctggacagggagtctatg
tacgtcaggaacaacatctatgaggccaccttcctggctgccgacaatggttctcccccg
gccagtggaacaggtactctgcagatccatctgatagatgtgaatgataatgctccggtg
atgatgcccaaggaggcccagttgtgtgaacgcgccaatccccgctccaaggtcaacatc
acagcctccgatgccgacgctgacccccatgtgggaccctttgtgttcgagctgccctcc
tacccctccagcgtccgacgcaactggaccatctcccggatcagcggtgactatgcccag
ttgagactgaggattccctacctggatgcagaggtgtatgatgttcccatcatcgtgtcg
gactccggtaacccgcccctctctaacaggtccattataaaggtcaaggtgtgtccgtgt
gatgacaacggagactgtactaccaccggagctgtggctgcctccggactggggaccgga
gccatcatagccatactcatctgtatcatcatactgcttatcctggtgctagtgtttgtg
atgtggatgaagcgcagggagaaggagcgtcaggccaagcccctgctgatcgacccagag
gacgacgtcagagacaacattctgaagtacgacgaggagggaggaggagaggaggaccag
gactatgacttgagccagctgcagcagcctgagtctgtggagcacataatcagtaaacca
gtgggggtgcgcagggtggacgagaggcccatcatcgctgagtcccagtaccccgtcaga
cccagcctgccccaccctggagacatcggagacttcataaacgacggtctgagggcggcg
gacaacgaccccacggccccgccctatgactccctgctggtgtttgactatgagggcagt
ggctccacggccggctctgtcagctccctcaactcctccagctcaggagaccaggactac
gactacctcaacgactggggcccccgcttcaagaagctggcagacctctacggcggggga
gacgactga
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