Salvelinus namaycush (lake trout): 120021164
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Entry
120021164 CDS
T07522
Name
(RefSeq) SR-related and CTD-associated factor 4-like
KO
K13167
SR-related and CTD-associated factor 4
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120021164
03041 Spliceosome [BR:
snh03041
]
120021164
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120021164
Spliceosome [BR:
snh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
120021164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
120021164
NCBI-ProteinID:
XP_038820731
UniProt:
A0A8U0PA65
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All DBs
Position
Sna26:40407596..40468235
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AA seq
1163 aa
AA seq
DB search
MDAVNAFNHELFSLMDMKPPISRAKMISITKSAIKAMKLYKHVVQIVEKFIKKCKPEYKV
AGLYVVDSIVRQSRHQFGVDKDVFGPRFTKNITGTFENLCLCPTEERSKIVRVLNLWQKN
GVFKMEIIQPLLDMAISGSSSAAAADTEMDDPDPGFPSSPSPVKGPVTSVTENTVVAPVP
QLQNSDAFAAVAQLFQSSKGQQLQQMLQNFQQIPLKPQTHPFPPQTHSHPQAHPQPHLQA
PPHPQPNLQAPPHSQPHLQAPPHSQPHLQAPPHPQPHLQAPPHPQPHHQAPPHPQPHLQA
PPHPQPHLQAPPHPQPHHQAPPHPQLHHQAPPHPQPHLQAPPHPQPHLQAPPHPQPHLQA
PPHPQPHLQAPPHPQPHLQAPPHPQPHLQAPPHPQPHHQAPPHPQPHHQAHPQPPANLHH
LHSQPHLQTLTPAAQRLPLPSSEPTQQKTAFDKVATLLDRFDYDDEPEGADESKKHQTSF
TQQPPGFPQHFQQHMMGMIQDLTHQIPLPPNGQLQGYGLLPGQAYPGMVGPPGQPLPGTA
PPGFPGGYPPNKDAFGQHVGQQEQDMNMDLDPPSMKDGRHRPDGRKSPSGSRSPKRRRSR
SNSRTQRSRNRRSRSRSRDRRRHSPRSRSQERREREKEKEKERERRQKGLPQPKADTLSV
CSTTLWVGQLDKRTQQQDVACLLEEFGQIDSINMIPPRGCAYIVMVHRQDAFRALQKLSR
GSYKVNQKAIKIAWALNKGIKAELKQYWDVELGVTFIPWSKIRQDQLEDIREGGTLDPDT
LDPEWRSVQSNQDTPEEFRQNGSSEPLATVEDTAGAAPVATPVQVHPVQVQSMGGVGSLQ
QHPSFPPGPGPPGGPPMGLPPPSFPPGVPPGPPPSFMRPGPRFNPMQMMPPGFLLPGSMP
LGPSGPPPSAAGGVGGVELSLDPAGLGNQVPGPPGGSPGGPIPLSGGLLGARPGMIPLQR
PPVHSPGPVLPPPHMQRFPPPHGGPHGPHPPRGPPHHNMPPQMMPPNRGPHPHMMHHDGP
PPPPGGPRGFGMGMPPSHPIRGPFPPHGPLPGGPPPPFMRGGPRGPEGPEEIEGRGPPRG
ERPGFRDRDPDRERERDWERDRERERFEPFQSQQKVESEPSGLPVEVTGTEPRVACVSGS
TSQPQPIEKTHADETQETEAVIG
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtaaacgctttcaaccatgagctgttctccttgatggacatgaagccccca
atatctcgagccaagatgatatccatcactaagtcagccatcaaagctatgaagttatat
aaacacgtggtccagattgttgagaagttcattaaaaagtgtaagccggagtacaaggtg
gcaggtctatatgttgtagactccatcgtccgacagtcccgtcatcagttcggcgtggac
aaggacgtgttcgggccacggttcaccaagaacatcacgggaacgtttgagaacctctgt
ctctgtcccactgaagaacggagtaagatagtgcgtgtgttgaatctgtggcagaagaat
ggtgtgtttaagatggagatcatccagcctcttctagatatggctatatctggttccagc
agtgctgcagctgcagacaccgagatggacgacccagacccaggtttcccctcatccccc
tcaccagtaaagggtccagtcacctcagtaacagaaaacacagttgtggcgcctgtccct
cagcttcagaactctgacgcattcgctgctgtcgctcagctcttccagtcctcaaaggga
caacagcttcaacaaatgctccagaacttccaacaaattccgttaaagcctcagactcat
cccttcccgccccagacccacagccacccccaggctcatccccagccgcatcttcaggct
ccaccccatccccagccgaatctccaggctccaccccattcccagccgcatctccaggct
ccaccccattcccagccgcatctccaggctccaccccatccccagccgcatctccaggct
ccaccccatccccagccgcatcaccaggctccaccccatccccagccgcatctccaggct
ccaccccatccccagccgcatctccaggctccaccccatccccagccgcatcaccaggct
ccaccccatccccagctgcatcaccaggctccaccccatccccagccgcatctccaggct
ccaccccatccccagccgcatctccaggctccaccccatccccagccgcatctccaggct
ccaccccatccccagccgcatctccaggctccaccccatccccagccgcatctccaggct
ccaccccatccccagccgcatctccaggctccaccccatccccagccgcatcaccaggct
ccaccccatccccagccgcatcaccaggcacatccccagcctccagccaacctccaccac
ctccactcccagccccatctccagaccctcaccccggccgctcagcgactccccctcccc
tccagcgagcccacccagcagaaaacagcgtttgacaaggtggctacgctgttggaccgt
tttgactatgacgatgagcctgagggagccgacgaatcaaagaagcaccagacatctttt
acccagcagcctccaggtttcccccagcactttcaacaacacatgatgggcatgatccaa
gacctcacacaccagatacctctccctcccaacggccagctccagggctatggtctgctg
ccgggccaggcctacccaggaatggtgggtcctccaggccagcccctccctggtacagca
cctccgggcttccctgggggataccctccaaataaggacgccttcggccaacacgtgggc
cagcaagaacaggatatgaatatggacctggaccccccctccatgaaggatggacgacac
cgaccggatggcaggaagtcaccatcaggatctaggtctcctaagaggaggcggtcgcgg
tccaactctagaacacaacggtccagaaacagacgctctcgctcacggtccagagaccgc
cgcagacactccccacggtcacgctcccaggaacgcagggagagagagaaggagaaggag
aaagagagggagagacggcagaaaggactgccacagcccaaggctgacacgctgagcgtg
tgtagtaccactctgtgggtgggtcagttggacaagagaacacagcagcaggatgtagcc
tgtctactggaggagtttggacagatagactccatcaacatgattcctccccgaggttgt
gcctacattgtcatggtccacagacaggatgccttcagagctctgcagaaactcagcaga
ggatcctacaaagtcaaccagaaagccatcaagatcgcgtgggcgttgaataaaggtatc
aaagcagagttgaagcagtactgggatgtagagctgggcgttaccttcatcccctggtct
aagatacgacaggaccagctagaggacatcagagagggagggacgctggacccagacaca
ctggacccagagtggaggagtgttcagagtaaccaggacacaccagaggagttcagacaa
aatggcagctctgagccgttagccacggtggaggacacagctggggccgcacctgtagcc
actcctgtacaggtacatccggtccaggtgcagtcgatgggaggtgtaggttctctccag
cagcacccctccttcccccctgggcctggccctcctggtggtccccccatgggcctgcct
cccccttccttcccccctggtgtaccacccggacctcctccctccttcatgagaccggga
ccaaggttcaaccccatgcagatgatgccaccaggtttccttctgcctgggtcgatgccc
ctgggcccctctggcccccctccctcagcagcagggggtgtagggggagttgagctgtct
ctggatccagccggcctgggtaaccaggtgcctggtcctccagggggctcaccaggcggt
cccatcccactgtctggaggtcttcttggggctcgccccggcatgatccccctccagcgc
cctccagtccactctcctggtccggtcctccccccacctcacatgcagcgcttccctcct
ccccacggtggcccacatggcccccacccccctcggggccccccccaccacaacatgcca
ccccagatgatgccccccaacaggggcccccaccctcacatgatgcaccacgatggcccc
cctccgccgcccgggggcccacgagggtttgggatgggcatgcccccttcccatcccata
aggggtcccttccctccccacgggcccctccctggggggcccccaccacctttcatgagg
gggggccctcgagggccagaggggccggaggagattgaggggagggggccccccaggggc
gagagacctgggtttagggacagagatccagatagggagcgagagagggactgggagagg
gatagagagagggagaggtttgaacccttccaatcccaacagaaggtggaatcggaaccc
tctggcctccctgttgaagtgactggtacagaaccgcgcgtggcgtgtgtttctggatct
acaagtcaacctcagcccatagagaaaacacatgcggatgagacacaggagactgaggca
gtcataggctag
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integrated database retrieval system
