Salvelinus namaycush (lake trout): 120021171
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Entry
120021171 CDS
T07522
Name
(RefSeq) FRAS1-related extracellular matrix protein 2-like
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120021171
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
snh04091
]
120021171
Lectins [BR:
snh04091
]
C-Type lectins
Lecticans
120021171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Big_9
Motif
Other DBs
NCBI-GeneID:
120021171
NCBI-ProteinID:
XP_038820737
UniProt:
A0A8U0P9H1
LinkDB
All DBs
Position
Sna26:41329678..41458280
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AA seq
1954 aa
AA seq
DB search
MLLFYIFILLAASLSGSGVAQLPDSYGLSFPLRSELSEDAILVANNGIRVPFGRSVFIDP
VNDLVIQTQPGDRCSITVLDNQPLSQRPGHLSPKKFPCDFGPNDVTYSHFGSRSLAKDRV
RLQLRYDTQTETVIIPFMTEVEVVFTQLEVLTKNMPLTVVKLNGVSNAIDKKILEFTYDR
NSKKCKVNSLASGSALPKYGRLVDDGLTKIMDCDEFIQSDIRYEHTFVHKSPNRDYVPMV
VELCDKEGNIIKEEYFQLMIHIKEGEVNTPPKPSFMAMLMMEVSQFVMTALTTDMLAAED
LESNPDELIFNITSPLSYEDGYIVSTDDRNLPITSFYQRDLRDLKIAYKPPSLDSDTERI
FQIEFEVVDPDVAVSDPFAFMIVVKPINSLAPVVTRNTGQLLYEGQSRPLFSTHNLEISD
EDDLDGVTVTVVDGLRHGDLTVLGSRRKYFTAADLNTGVVIYQHDGSDTYSDNIIFRMTD
GKNQVEFLFPLTIVPMDDEPPIINVNTGLVLFKNQIMAISPLMLSAADIDSEDSTIKFMI
EPPFSTIGGLLLRQSDAPEDPESWKFNAEDEVYEKEVTEWLQKDITDGKVFYKHTGPHNT
DTVIDQFVFKVHDDNDPPNESGESTFIIRVLPIDDVPPELFPGTTLQMTVQEYQLTHFGK
NMLLYTDLDSEDRDLKYTVIQPPTDKNSPVVFGSIVLTESPDTEVNEFTQAQVNHHKISY
SPPDQELGITAHVLQFRFSVEDTAGNSIEGAFRIFLQPVDNKPPQITNTGFSVFEQGVHV
ISSAELDTSDPDTDSKQISFTLSQPPQHGQVQHAFSDLPKGGAFYLEDISDRKITYVQNG
DETVSDVFQLDVSDGIHVITVKVRVVVKPVDDETPTVSLPAGTVCSHMDVLENGAMEITT
SVRQGWDEDTDDLQLTFIIENAPVFGVILVAGAHAVKFTQADIINGLVVYAHTGGEIGLT
SIKDSFNLTLTDMSDDWSVGRNKVNGVHVRVTIIPVDNQAPEVTVGDQFIVVEGEKYAIG
AQYLKAEDKDTTSDDILCTIIVQPTSGYVENVSPAPGSESSRSGTAVSAFYIRDIREGHV
YYVQSIHKGLEPVEDRFTFRCSDGINFSKRHFFPIVIIPANDEKPEIYLREIVVIEGMNI
VIDTHLLNGADTDIPAEELTFIISKLPKHGFILNQLATGSVPVINFTLEQIREASSFIYV
HDDSETTEDSFDVILTDGKYSVERTAMVMIIALDDETPRMLVNVGLEVEVGEAKEINNKV
LKATDLDSDDGALTYVIRFGPVQGVLQRKTASGSLENIMLGMNFTQRDVDKRLIIYTHMG
QEGICDLVKFDVTDGMNPLIDRYFYITIRSIDMVFPDVVSKGVSLKEGGRVTLTTDLLST
SDLNSPDERLVFTITRAPVRGHLECTDTPGIPIVSFTQLQLAGSKVYYIHTSDDKVKMDS
FEFEVTDGYNPVFRTFRVAIVEVDNKKTVLTFHGLVVTEGQSKLLTPFELTAEDQDTADL
LLKFTVTQPPVHGKLLYNHTSPVTIFTKQDLSENLISYKHDGTETSEDSFSFTMTDGTHT
DFFVFPDTVFETRRPQTIKITVVAIDNDVPQLVVNKGAPTLRILSTGHLGFPVTSKVLRA
LDRDSVPASLVFHITTEPKHGYLINLGKGNDSIDTFSQADIDDLKICYVLRNDENATTDL
FLFSVEDNGGNKLKEQQFRLDWSWISLERERYVVDEQDAFLEVVLKRRGYLGETSFIALV
GLQHLLVFSTCWGIHGHGGGIHGHVGGIHGHGGGIHGHVGGIRDHVGGIRDHVGGISDHV
GGIRDHVGGIRDHGGGIRDHGGGIRDHGGGIRDHGGGIRGHGGGIRGHVGGICDHVGGTR
GHVGGIRGHVEGTRGHVGGIRGHVEGTRGHVGGIRGHVGGIRGHVGGIRGHGGGIRGHVG
GIRGHGGGIHGHGGGQVPGGTRKCLFSWTVDNQQ
NT seq
5865 nt
NT seq
+upstream
nt +downstream
nt
atgctactattttatatatttatcctccttgccgcgtcgctttcaggtagcggcgtggca
cagctcccagatagctacggattatcattcccgttgaggtcagaactgtctgaggatgcg
atactggttgcaaataacggaatacgcgtgcctttcgggagatccgttttcattgatcct
gtcaatgatttggtgattcaaacgcaaccgggggaccggtgcagcatcaccgttctggat
aaccagccgctttcccagagacccggacacctgtctcccaaaaagtttccgtgtgatttc
ggtcccaacgacgtcacctactcccatttcggctcgaggagcctggctaaggacagagtg
aggctacagctcaggtatgatactcaaaccgaaaccgttatcatcccattcatgacggag
gtagaggtggtttttacgcaactggaggttctcaccaaaaacatgcccctgaccgttgtt
aaactgaacggcgttagtaatgccattgataaaaagattttggaattcacttatgacaga
aactctaaaaaatgcaaggtgaattctttagcgagtggtagcgctctccccaagtacgga
agacttgtagatgatggcctcactaaaattatggactgtgacgaattcatccaatctgac
atccgttacgagcacacgtttgttcacaaatcccccaacagagactatgtgcccatggtt
gttgaactatgtgataaagagggaaacataataaaagaggagtatttccaactgatgatc
catatcaaggagggagaggtgaacactcctcctaaacccagcttcatggcaatgctgatg
atggaggtgagtcagtttgtgatgacagctctgaccactgacatgctggctgcggaggac
cttgagtcgaaccctgatgaacttatcttcaacatcacctcccccctctcttatgaggat
ggttatatagttagcacggatgacaggaacctacccatcacctcgttttaccagagagac
ctacgggacctgaaaatagcttacaagcccccgtccctggactcagacacggagaggatc
tttcagatagagtttgaggtggtggatccggacgtggcagtctcggacccctttgcgttc
atgattgtggtgaagccaattaactctctggcgccggtcgtgacgcgaaacacgggtcag
ctgctttacgaaggtcagtcccgcccccttttctctacccacaacctggagatcagtgac
gaggacgacctggacggtgttacggtaaccgtcgtcgacgggctccgccacggcgacctc
acagtcctggggtcgcgcaggaagtacttcacggctgccgacctgaatacgggtgtggtc
atctaccaacacgacggcagcgacacgtacagtgacaacatcatctttagaatgacagat
ggcaagaaccaggtggagttcctgtttcccttgacgattgttcccatggacgacgagcct
cccatcatcaacgtcaacactggtcttgtgctcttcaagaaccagattatggccatctct
cctctgatgctcagcgccgctgacatcgactcagaagattccacgatcaaattcatgatc
gagccgccattctcgaccatcggggggttgctgctgaggcagtccgacgccccagaggac
cccgagtcgtggaagttcaacgctgaggatgaggtgtatgagaaggaggtgacagagtgg
cttcagaaagacatcacagatgggaaggtgttctataaacacaccggaccacataacact
gacacagtcatagaccagtttgtgttcaaagtccatgatgacaatgacccgcctaacgaa
tcgggcgagagcacgttcatcatcagggttctacccatcgacgacgttccccctgagctt
tttcctggtactacgctccaaatgactgttcaggagtaccagctgactcatttcggtaag
aacatgcttctgtacaccgatctagactctgaagaccgcgacctgaaatatacagtgatc
cagccgccaacagacaagaacagcccggtggtgttcgggtccattgttctgaccgagagc
cccgacactgaggtcaacgagttcacgcaggctcaggtcaatcaccacaagatatcctac
agtcctcccgatcaggagctgggcatcacggctcatgtcctccagttccggttctctgtc
gaagatacggccgggaatagcatcgagggggctttcaggattttcctccagccagttgac
aacaaaccaccacagatcactaacactggcttttctgtgtttgagcaaggcgtgcatgtg
atatccagtgctgagttggacacatcagacccagacacagacagtaaacagatatcgttt
accctcagccagcctccgcagcacggccaagtccagcatgccttctcagacctacccaaa
gggggagctttctacctcgaggacatctcggacaggaagatcacatacgtccaaaacggc
gacgagacggtgagcgacgtgttccaactcgacgtcagcgatggaatccacgtcatcacg
gttaaagtcagagtcgtcgtgaagcccgttgacgacgagacgccgactgtcagtttaccg
gccgggacggtctgttcacacatggacgtcctagagaatggagctatggagatcacgacg
agtgtccgccaggggtgggacgaggacaccgacgacctccagctgaccttcatcatcgag
aacgcgcccgtgtttggtgtcatcctggttgccggggcgcatgccgtgaagttcacccaa
gccgacatcatcaacggtttagtggtgtacgcccacaccggcggagagattgggctaacg
tccatcaaggacagcttcaacctcaccctaactgacatgtcagatgattggtcagtgggc
agaaacaaggtcaacggtgtccacgttcgcgtcacaatcatccccgttgacaaccaggcc
cctgaggtaaccgtgggtgaccagttcatcgttgtcgaaggagagaagtatgccatcgga
gcacagtatttaaaggccgaagacaaagacacaaccagtgacgatattctctgcaccatc
atcgtccagcccacgtctggttatgtggagaacgtctccccagctcctggatcagagagt
tcacgttcagggacagcagtcagcgccttctacattagagacatcagagaaggacatgta
tattatgttcagagtatccacaaggggttagaacccgtagaggacaggttcacatttaga
tgctccgacggtatcaacttctcaaaaaggcatttcttccctattgtgattattccggct
aatgatgaaaagccagagatttacttgagggagatagttgtgatagaggggatgaatata
gtcatagacactcatctcctgaacggagcagacactgatatcccagcagaggagctgact
ttcatcatctccaaactgcccaaacacggcttcatcctcaaccagttagccacaggctcg
gtcccagtcataaacttcaccttagagcagatcagggaagcttccagtttcatctacgta
catgacgactctgagaccaccgaggacagcttcgacgtcattctaacagacgggaaatat
tcggtagagagaaccgccatggttatgatcatcgccctcgacgacgagacaccgagaatg
ctggttaatgtcggtctggaggtggaagtaggtgaggcgaaagagatcaacaacaaggtc
ctcaaagccaccgatctagactcggacgatggagcgttgacctatgtgatccgcttcggt
cctgttcagggtgttcttcagaggaaaaccgcatctggttctctggagaacatcatgtta
ggcatgaatttcacacagagggatgtggacaaaaggttgatcatttacacacacatgggt
caggaaggcatctgtgacctggtcaagttcgacgtcaccgacggcatgaaccctctgatc
gatcgttacttctacatcaccatcaggagcatcgacatggtcttcccagacgtggtcagc
aagggagtctctctgaaggaaggcggtagagtgacattgaccacagatcttctcagtact
agcgatctcaacagtccagatgaacgtttggtgttcaccatcaccagagctccagttaga
ggacacctggagtgtactgatacaccagggatccccatcgtgtcattcacccaactccag
ctggctggcagtaaagtctactacatccatacctcggacgacaaagtcaagatggacagt
ttcgagtttgaggtaaccgacggttacaacccggtgttccgtacgttccgagtcgctatc
gtggaagtggataacaaaaaaacagttttaacgtttcacggacttgtggtcaccgagggg
cagagtaaactcctcacgccattcgagctgaccgcagaggaccaggacacagctgacctg
ttgttgaagttcaccgtcacccaaccaccggtgcacggcaaactcctctataaccacacc
tcaccggtcaccatcttcaccaagcaagacctcagcgagaacctcatcagctacaaacac
gatggcaccgagacctccgaagactccttctcatttactatgaccgacgggacgcacact
gacttcttcgtgttccccgacacggtgttcgagacacggcgcccacagacgattaagatc
acggtggtggcaatagataacgatgtcccccagctggtggtgaataagggtgccccgaca
ctgaggatcctgtccacggggcacctggggttccccgtgacgtccaaggttctacgggcg
ttagacagggacagcgttccggcttccttagtgttccacatcaccacggaacccaagcat
ggttacctcatcaacctgggcaaagggaacgactccatcgacaccttcagtcaagctgac
attgatgacctaaagatctgctatgtgttaagaaatgatgagaacgcaaccacagacctc
ttcctcttctctgttgaagacaacggtggaaacaagctgaaggagcaacagttccgtctg
gactggtcctggatctctctggagagagagcgctacgttgtggacgagcaggacgccttc
ctggaggtggtcctcaaacgacgagggtatctgggagaaacctccttcatagcacttgtt
ggtcttcagcacttgttggtcttcagcacttgttggggtatccacggccatggagggggc
atccacggccatgtagggggcatccacggccatggagggggcatccacggccacgtaggg
ggcatccgcgaccacgtagggggcatccgcgaccacgtagggggcatcagcgaccacgta
gggggcatccgcgaccacgtagggggcatccgcgaccacggagggggcatccgcgaccac
ggagggggcatccgcgaccacggagggggcatccgcgaccacggagggggcatccgcggc
cacggagggggcatccgcggccatgtagggggcatctgcgaccatgtagggggcacccgc
ggccatgtagggggcatccgcggccacgtagagggcacccgcggccatgtagggggcatc
cgcggccacgtagagggcacccgcggccacgtagggggcatccgcggccacgtagggggc
atccgcggccacgtagggggcatccgcggccacggagggggcatccgcggccacgtaggg
ggcatccgcggccacggagggggcatccacggccatggaggggggcaagtccccggtggc
accaggaagtgtttgttctcttggactgtcgacaatcagcagtga
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integrated database retrieval system
