Salvelinus namaycush (lake trout): 120021176
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Entry
120021176 CDS
T07522
Name
(RefSeq) thrombospondin type-1 domain-containing protein 1
KO
K24433
thrombospondin type-1 domain-containing protein 1
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
snh04990
]
120021176
Domain-containing proteins not elsewhere classified [BR:
snh04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
120021176
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GFIT
Motif
Pfam:
THSD1_D3
TSP_1
TSP1_spondin
TSP1_ADAMTS
TSP1_CCN
TSP1_CFP_C
Motif
Other DBs
NCBI-GeneID:
120021176
NCBI-ProteinID:
XP_038820742
UniProt:
A0A8U0P9D1
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Position
Sna26:42921144..42930290
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AA seq
711 aa
AA seq
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GGGVEGGVGAEGPLPSVPLAFNWLTQGENETEFNCSVFDPGRNKYCFRFVLNFSRSPSPA
QTCLVVHRNAESWGVWQAWSVCSVSCGEGVRERVRECLLPSGGGSMQCTGMVKEQSLCSL
EDCTVLPAPSPSLPPPPASSFLGGNLVVVAGISLCLAVILATILVTLWRKLCRTPQCSSV
RSGSMHSPGGRKLSDEASICGNSLQRPSLSDSQGNHRGTGPGLAQNERPNPGCKPLPQPP
PLVIPLDQDPDRLSPSGQKVLPPIFGYRLAQQQLKEMKKRGLKEATQLYHVSQSPVHDTL
LEDSPTSTPTQPGFTLPGLSPNPSPLDLQEEDSNLSRFRITAPFPEPRVPQRSSVTLPDR
LSPRVELVLGPPVAGYMREGGGGGGGSSKRRDRTADWVEMVERTGLGGMGGGGVPSNSYQ
KNPNCRRTSSFHVTKPPPPPAAPCRPHRERSQTQVGPRTRTLPEGSCRIRGTLETKNPAY
PPYPIPEQSTPDWARPKPRPLWPGDDRRRPWVETGCPPCFSNKPKHAENNTTYLISDPEH
TETNTTTAAMLGSELLSNPELTLERERRRIGDRREGGEDRGERGGTSGIGGPGLGPGVGS
RGCTAYLTPDRAERAEHNWNRRGPSPIQRNILARKLREAQSCNTASDQQGRHNPQQQRQR
SSTFSVSASEQRKGRCRSLPLSGDSPYGLTEAEQCMLDLDMTSLYLGEDEF
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
ggtggaggggtggaagggggtgtaggggcagagggcccgctcccctccgttccactggcg
tttaattggctgacacagggggagaacgagacagaattcaactgttcggtgtttgaccca
ggaaggaataaatactgcttcagatttgtgctcaacttcagccgctctccgagtccagct
cagacctgcctggtggtgcacaggaacgcagagtcatggggtgtgtggcaggcgtggagt
gtgtgcagtgtgagctgtggagagggggtgagggagagagtgcgagagtgtctgctgccc
tccggtggtggaagtatgcagtgcaccggcatggtcaaggaacagtctctctgctcactg
gaagactgtacagtcctccccgctccctctccgtccctcccccctcctccagcctcctcc
tttctcggtggtaacctggtagtcgtggcaggtatatccctgtgtttggcggtcatccta
gctaccatcctggtcaccctgtggcgtaaactctgccggacacctcagtgtagctcggtc
cgcagcggatctatgcactcacctgggggacgtaaactctctgacgaggcctccatctgt
gggaacagcctccagagacccagcctctccgacagccaggggaaccacaggggcacaggg
ccagggctagcccagaacgaaaggcctaacccggggtgcaagcctctgcctcagccccct
cctctggttattcccctggatcaggacccagatagactgtctccatcgggacagaaggtg
ctaccgccaatctttgggtaccgtctggcccagcagcagttaaaagagatgaagaagaga
ggtttaaaggaagccacccagctctatcatgtctcacagagccctgtccacgacactctt
ctggaggactcccccacctccacccctacccagccagggttcaccctccctgggctcagc
cccaaccccagccccctggacctccaggaagaggattctaatctgagccggtttcgtatc
accgcccccttccccgagcccagggtcccacagcgcagctcggttactctgccagacaga
ctgagccccagggtggagctcgtcctggggcctcccgtggccggatacatgagagaaggc
gggggaggaggtggcgggagctccaaacgacgagaccgcacggcagactgggtggagatg
gtggagaggactgggttaggagggatgggaggaggaggcgttccctccaactcgtaccag
aaaaacccaaactgtagacggacatccagctttcacgtcaccaagcccccacctccccca
gcagccccatgtcgcccccacagggagaggagtcagacccaggtgggtccccgcaccagg
accctccccgagggcagctgtaggatccgaggaaccttggagaccaagaacccggcctac
cccccctatcccatcccagagcagagcacccctgactgggccaggcccaaaccgcgaccc
ctttggcctggggacgacaggagaagaccctgggtggagactggatgtcctccgtgtttc
agtaacaaacccaaacacgctgaaaacaacaccacctacttgatctctgaccctgaacac
acagagaccaacactacaacggcggccatgttaggatctgagctgcttagcaaccctgaa
ctcaccctggagagggagaggcggaggattggtgatagaagagaaggaggtgaagataga
ggagagagaggtgggacttcaggtataggtggaccaggattaggaccaggggtggggtct
cgtggctgcactgcttacctcaccccggaccgggcggagcgggcagaacataactggaac
cgtcgaggcccttccccgattcagagaaatatcctggccaggaagctgagagaagctcag
tcctgcaacaccgcctccgaccagcaggggcgccataacccacagcagcagaggcagcgc
agctccacatttagcgtgtctgccagtgaacaaaggaaggggaggtgcaggtctcttcct
ctgtctggagactccccctatggactgactgaggcagagcaatgcatgctggatctagat
atgacctcgctatacctgggagaggatgagttctga
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