Salvelinus namaycush (lake trout): 120021248
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Entry
120021248 CDS
T07522
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120021248
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
120021248
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
120021248
NCBI-ProteinID:
XP_038820845
UniProt:
A0A8U0P9K5
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Position
Sna26:20334295..20446986
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AA seq
2156 aa
AA seq
DB search
MTTAANWVANGASLEDCHSNLFSLAELTGIKWRCYSFRGGGEYGPVISAPAQDDPVLRSF
IRCVQANLLCVWRRKVKPDAKELWIFWWGDEPNLSDVIHHELEVAEEGLWECGLSYECRT
LLFKAIHNLLERCLMDKDFVRIGKWFVKPYELEEKHMGTSEHLSCSFTFFLHGESNVCTS
VEVAQHQPAYHITDDHTRLAQISSAPVQVILSPYGLAGSLTGQAYKMSDPAVRKLMEEWS
YFYPMVLQRHREGGTGGAGTGGIGAEREGTDRPYDPHSHVAVEVIVGGVRMIYPAAFVLV
AQGDLPVEEPPPAPGAQGGSRDPSHCSIPLTPPTSPEQPCSADSGFVTTVSSVLPAQDSA
MGVTNSPKHSGKKLTNQVVHEAWKECYLNQLQHKCSGPSSVTPKKEAPNGVPTWDFTDPE
ERTPCSCSRLKQQKQQQQTNTSSANPPSGANTTPSSGPALPPPSLLKHKATDKPEKADKQ
PKRAAAMTPFHHRLSVGQEACLEQDSSGGSQLGLVSLDPPLDPMPSCKYPKPLSAGRKAP
ESLLHSPVSPLPPTLSPHPRGGQDPEVLETSVGMALCPDGASGMGVMEPSETALYAAPLG
PREREAGAGWWRGFRTPRADKAEFRPPELPSDRVEVKTETQATEGVALKRLFMQTQKRFK
ISEECVRAHIQTLGLLHQPGDPGDDPYDFKEGDIEYSFPTSKRLKGQGRDPSKRGPKGEE
ISNGALPDGKDAMSIFSSAPKADDDSPQDDDAAAKAQNPSLTRETDLVVLISDLENIFDE
DEEELRHTARVLVSGSEDRREGRVAVPYPSTVADLQRMFPTPPSLEQHPAFSPIMTYRDT
PSQEPPAPSAGSDYPLGPLSSTQLQEYRMEVEEGMASPKPEDIKDFSFVYRVPSVQPQMG
CSMFAPLRTLPSQCLPPLKLPDQCYYRPSWALLPKMEHYSSLPPSHHTPFIRDGYVNIPS
VGDQEYSQLSASALSVGTTGGILPSPSPATPRFSVPTPRTPRTPRGIGTASGQGSVKQEG
TGTELSSPTSTPSTSLPMSSVAEPHTSSPPIPEAHSLYAALLLSDSVLNVFKDRNFDSCC
ICACNMNVKGADVGVYIPDSTLEDQYRCMCGFSAIVNRRLAHGTGLFLEDELDIFGRGSE
VGQAAERRLALCRRDPPMGDPRAKRPQDSSPAPSSVMVLLQQQCSQPISSLASMHLPPSC
SCNGRQGALIQSWMADKQWVDGSDACVECYNALVQGQQYVDNPAGGKVDPAVVRSSALHS
WPHTNMLDISMLSSQDVVRMLLSLQPYLQDAIQKKRMGRTWENIQHVQGPLTWQQFHKMA
GRGSYGSEESPEPLPIPTLLLGYYDYYDRNFLALSPLALPFWEKLLLEPYGGQRDVAFLV
LCPNSDTLLAGAQVFFQELSAVYETCRLGKHRPLAKVSRDGLVRVGAVDTETETEKEKEK
ERQEEEKVDQWFTGPWAGQQHIDNLRKLKLYARACRRQLGPQLSALSLDSSLFIPPKHQP
PLASTPSSAQPAPSSSQPPSGPGVPAEGEPAAAPSSGSTPTPTAAASDQPGSAEITQGGA
AEAKTTPNATPPPPPPSQPAETPESLAERERIGIPTLADSADSHAHPPAIVIYVVDPFLC
SGGARDGGGGGEEEEGEEVEAGSVWLLGLLRCYTEMLKTLPESMRPALVLQVVPCQYLLQ
PASGESPLYLQHLRALAFSAYSQCRRLLPTKTHIKSLTGFGPASTLESVLKSPEHPSPLQ
GYSPPYILGPTRAKMPEPGEVWAEIPPRYNVLFVGYCLSHDQRWILVSCTDQQGELLETC
IINIDVPNRVRRPKVSARKMGLQKLWDWCVGIIQMTSLPWRIVIGRLGRLGHGELKDWSA
LLGEHSLHSISRQLKEACRMCGISSADSPSILSACLVAMEPQGSIVVMPDAVTMGSVFGR
STALNLQTSQLNTPQDASCTHILVFPTSATTQLAASSYPTEDNADDMFDLPFPDELENDI
GHDILNLHPSPNTSPVPSPGSPSGMGGSSHFQHNRSQGERLLSRENPPEELKQQPLALGY
YVSTAQADSLPHWFWASCPQAQNQCPLFLKASLHHHISITTAQSDEPNQTTSDKTTKRTP
HPLDSKTTSDVLRFVLEQYNALSWLTCNPATQDRRSCLPVHLAVLTQMYNAVLNML
NT seq
6471 nt
NT seq
+upstream
nt +downstream
nt
atgactacagcagcgaattgggtggctaacggggcaagccttgaagactgccactccaac
ctcttctctctggcggagctcacgggcatcaaatggcggtgctacagcttccgcggtggt
ggcgagtacggaccggtgatctcagcgccggcacaggatgacccggtactgcgcagcttc
atacgctgtgtgcaggccaacctgctgtgtgtgtggcgccgcaaagtcaagcctgacgcc
aaggagctgtggatcttctggtggggcgacgagcccaacctctccgacgtcatccatcac
gagctggaagtggctgaggagggactatgggagtgtgggctgtcatatgaatgccggacc
ctcctgttcaaggccattcacaacctgctggagaggtgtctgatggacaaggactttgtg
cggattgggaagtggtttgtcaagccatacgagctggaggagaagcatatgggcaccagt
gagcacctgtcgtgctccttcaccttcttcctgcatggggagagtaacgtgtgcaccagc
gtagaagtcgcccagcaccagcctgcctaccacatcactgacgaccacacccgcctggcc
cagatctcctcagcccccgtacaagtgatcctgagtccgtacggtctggcgggctccctg
acgggccaagcctataagatgagtgacccagctgtaagaaaactgatggaggagtggagc
tacttctaccccatggtgcttcagcgccacagagaagggggcacagggggcgcaggcacg
gggggcataggcgccgagagggagggcactgaccgaccatatgacccacacagccatgtg
gccgttgaggtcatcgtaggtggtgtgaggatgatctacccagcagcctttgtgctggtt
gcccaaggcgacctgcctgtggaggagcccccacctgcaccgggagcccaggggggcagc
agagacccatctcactgcagcatccccctcacaccccccacctcacctgaacagccctgc
tcagcggacagtggctttgtgacaacggtgtccagcgtcctccctgcccaggacagtgcc
atgggggtcaccaacagcccaaaacattctgggaagaaactgaccaatcaggtggtgcat
gaggcgtggaaggagtgttatcttaaccaactgcaacacaaatgcagtgggcccagtagc
gtgacgccaaagaaggaggcgccaaatggggtgcccacctgggacttcaccgacccagag
gagaggacaccatgcagctgctccaggttaaagcagcagaaacagcagcagcagaccaac
acctcctctgccaaccctccgtctggtgccaacaccaccccctcctctggcccggccctc
ccccctccctccctgctcaagcacaaggccacggacaaacccgagaaagccgacaaacag
ccgaagagagccgccgccatgacccccttccaccaccgcctctctgtgggccaggaggcc
tgcctggaacaagactcatctggagggtcccagctcggcctagtcagcctggaccctccc
ctggatcccatgcccagctgcaagtaccccaagcccctctccgccggcaggaaagctcca
gagtccctgctccactcccctgtctccccattaccccccacgctcagcccccatccacgg
gggggacaggaccctgaggtactggagacctctgtgggcatggccctctgtccggatggg
gcgtcagggatgggggtgatggaacccagtgagacggctctgtatgcagcccctctgggg
cccagggagagggaggctggggcaggctggtggaggggcttcaggactcccagggctgat
aaggctgagttcaggcctccagagctccccagtgacagagtggaagtaaagacagagacg
caggccactgagggagttgcactgaagagactattcatgcagacacagaagcgcttcaag
atctcggaggagtgtgttagggcacacatccagaccttgggtctcctgcatcagcctggg
gaccccggggatgacccctacgacttcaaggagggagacatcgagtacagcttccccacc
tccaagagactgaagggccagggccgagaccccagcaaaagaggccccaaaggagaggag
atcagcaacggtgcactgcctgatgggaaagacgccatgtccatctttagctctgctccc
aaagctgatgatgactcaccgcaggacgatgatgcggcggccaaagcccaaaacccttct
ctaaccagggagactgatctggtggtcctcatctcagacctggagaacatcttcgacgag
gatgaggaggaacttaggcacacagccagggtcctggtatcaggaagtgaagatcggagg
gaagggagggtggctgtgccctatccttcaacagtagcagacctccagcggatgtttccc
acacccccttccttggagcagcacccggccttctcccccatcatgacataccgtgacacc
cccagccaggagcccccagccccctcggcgggctccgactaccccctgggccccctgtcc
tccacccagctccaggagtaccggatggaggtggaagagggcatggccagtccaaaacct
gaggacatcaaggacttctcatttgtgtaccgtgtcccctccgtccagccacagatgggc
tgctccatgtttgctccgctgcggaccctccccagccagtgcctgccccccctcaagttg
cctgaccagtgttactaccggccttcctgggccctgctgcccaagatggagcactactcc
tccctgccaccctctcatcacaccccattcatcagagatggatatgtcaacatccccagt
gttggggaccaggagtattcccagttgagtgccagcgccctgtccgtgggcaccaccggt
ggcatcctcccctcaccctcccctgccaccccccgcttttctgtccccacccctcgtacc
ccccgcacccccagaggcattggcacggccagcgggcagggctcggtgaagcaggagggc
accgggacagagctgagctcccctaccagcacgccttccaccagcctgcctatgagctct
gtagctgagccccatacgtccagccccccaatacccgaggcccacagcctgtacgccgcc
ctgcttctctctgactcggtcctcaatgtcttcaaagaccgcaactttgacagctgctgc
atctgcgcctgcaacatgaacgtgaagggtgccgacgtgggcgtgtacatccccgactcc
acgcttgaggaccagtaccgctgcatgtgcggcttcagcgccatcgtcaaccgccggctg
gcccacggcacgggcctcttcctggaggacgagctggacatctttgggaggggctcggag
gtgggccaggcggctgagaggagactggcgctttgccgcagagacccacccatgggagac
ccccgggccaagcgcccccaggactcctcccctgccccttcctctgttatggtgctcctc
cagcagcagtgttcccagcccatctcctccctggcctccatgcatctccctccttcctgc
tcctgcaacggccgccagggggccctaatccagagctggatggctgacaagcagtgggtg
gatggcagtgatgcgtgtgtggagtgttacaacgcgctggtacaggggcagcagtatgtg
gataaccccgccggagggaaagtagatccggctgttgtgagaagcagcgctctacattcc
tggcctcacaccaatatgctggacatcagtatgctgtcatcccaggacgtggtgcgtatg
ctgctgtcgctgcagccctacctccaggacgccatccagaagaaacggatgggccggaca
tgggagaacatccagcacgtacaaggaccgctcacatggcaacagttccacaagatggct
ggacggggctcctacgggtccgaggagtcgccagagcctctgcctattcccaccctgttg
ttgggctactacgactactacgaccgtaacttcctggcgctgtcgcccctggcgctgccc
ttctgggagaagctgctgttggaaccgtacgggggacagagagacgtggccttcctggtg
ctctgccccaactctgacaccctgctggctggggcacaagtcttcttccaggagctcagc
gctgtctacgagacatgccggttggggaaacacagacccctggccaaggtgtccagagat
ggcctggtgcgtgtgggggcagtggacacagagacagaaacagagaaggagaaagagaag
gagaggcaggaggaggagaaggtagaccagtggttcacagggccatgggctggacagcaa
cacatcgacaacctcagaaaacttaaactctatgcccgagcctgcagaaggcagctaggt
ccacagttgtctgccctgtctttggacagtagtctgtttataccccccaagcatcagcct
cccttagcctctacgccctcctcagcccagcctgccccctcctccagccagcccccctct
ggccccggggtccctgctgagggagagccagcggcagcccctagctcaggaagcaccccc
acccccacggcagcagcctcggaccaaccaggctcagcagagattacccaaggaggggcc
gctgaggccaagactacccccaatgccacaccaccaccacccccacccagccagccagca
gagacccctgagagtttggcggagcgggagcgaatcggcatccccacgctggcggactcg
gccgatagccatgcccaccccccggccatcgttatctatgtggtggaccccttcctgtgc
tcaggcggagcgagggatggcggaggaggtggagaggaggaggagggagaggaggtggag
gcgggcagtgtgtggttactagggctgctgcgttgctacacagagatgctaaagacattg
ccggagagcatgagaccagctctggtgttacaggtggtgccttgtcagtacctgctccag
ccagccagtggtgagagccctctgtacctgcagcacctgcgcgccctggccttctcagcc
tactcccagtgcagacgcctcctacccacaaagacacacatcaagtctctgaccggtttc
ggccctgcctccaccctagaatctgtgctcaagagtccagagcaccccagccctctacag
ggctactctcccccgtacatcctaggtcctacccgtgccaagatgccggagccaggggag
gtgtgggcagagatccctcctaggtacaacgtgctgtttgtgggctactgcctgtcccac
gaccaacgctggatcctggtgtcctgcaccgaccaacagggagagctactggagacctgc
atcatcaacatcgacgtgcccaacagagtgcggcggcccaaggtctcggccaggaagatg
gggctgcagaagttatgggactggtgtgtcggcatcatccagatgacctcactgccatgg
aggatcgtgattggtcggctgggcagactaggacacggggaactgaaagactggagcgct
ctcctgggggagcactccctccactccatcagtcgccagctgaaggaggcgtgtcgtatg
tgcggcatctcctccgcggactccccctccatcctcagtgcctgcctggttgccatggag
ccccagggctccatcgtggtgatgccagatgcggttacaatgggctcggtgtttggtcgc
agcacggccctcaacctgcagacgtcccagctgaacaccccccaggatgcttcctgtacc
cacatcctggtattccccacctccgccaccacccagctggccgccagctcctaccccaca
gaggacaacgccgatgacatgttcgacctgcctttccccgatgagctggagaatgacata
ggacatgacattctcaacctgcacccttcccccaacacctcccccgtaccctcccctggc
tccccctctggcatggggggaagctcacacttccagcataacaggagtcagggagagagg
cttctgtctagggagaaccctccggaggagctgaagcagcagcctctagccctgggatac
tatgtctccactgcccaggccgacagcctgcctcactggttctgggcctcctgccctcag
gctcagaaccagtgtccactcttcctcaaggcatcgctacaccaccacatctccatcacc
acagcccaatcagacgagcccaatcagacgacctcagacaagaccactaagcggacgcct
caccctctggactccaagaccacctctgacgtgctcaggtttgtgttggagcagtacaac
gccctctcgtggctaacgtgtaaccctgccacccaggaccgccgctcctgcctgcccgtc
cacctggccgtgctcacacagatgtacaatgccgtcctcaacatgctctag
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