Salvelinus namaycush (lake trout): 120021528
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Entry
120021528 CDS
T07522
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03440
Homologous recombination
snh04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120021528
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
120021528
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
snh01002
]
120021528
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120021528
03036 Chromosome and associated proteins [BR:
snh03036
]
120021528
03400 DNA repair and recombination proteins [BR:
snh03400
]
120021528
Peptidases and inhibitors [BR:
snh01002
]
Metallo peptidases
Family M67
120021528
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
120021528
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
120021528
BRISC complex
120021528
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
120021528
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
120021528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
REP_ORF2-G2P
DUF7385
Motif
Other DBs
NCBI-GeneID:
120021528
NCBI-ProteinID:
XP_038821245
UniProt:
A0A8U0PAK0
LinkDB
All DBs
Position
26:complement(28279285..28328198)
Genome browser
AA seq
260 aa
AA seq
DB search
MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVDTNRIVHIHSVIILRRSDKRKDRV
EISPEQLSSAATEAERLAEMTGRLMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFV
GLIFSCFIEDKNTKTGRVLYTCFQSVQAQKGSEYERIEIPIHVVPHEAIGKVCLESAVEL
PRILCQEEQDTYRKIHSLTHLDPITKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNR
QSVIELQLEKERLTQELATM
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgagcgcagttcacctcgaatcagatgcctttttggtttgcatgaatcatgca
ttaagtaccgagaaggaggaagtaatgggactctgcatcggagaggtggacaccaaccgc
atcgtccacattcattctgttattattctccgacgctcagacaagaggaaggatcgcgtg
gaaatctcgcctgagcagctatcttcagctgctaccgaagctgagagattggctgaaatg
actggacggctgatgcgtgtagttggttggtaccactctcacccccacatcactgtgtgg
ccatcacatgtggatgtaaggacacaggccatgtaccaaatgatggaccagggctttgtt
gggctgattttctcctgtttcattgaggataagaacacaaaaactggtcgagttctctac
acctgcttccagtctgtgcaagcccagaaaggctctgagtacgagagaatcgagatccca
attcatgtggtcccgcacgaggccattgggaaagtgtgccttgaatcagcagtggagctc
ccaagaatcctctgccaggaagagcaggatacctacagaaagattcacagcttaactcac
ctggatccgatcacgaagatacacaatggctcagtgttcactaagaacctgtgcagtcag
atgtctgctgtgagtggtcccctgctgcagtggctggaggaccgtttggagcagaacaga
cagagcgtcattgagctgcagctggagaaggagagactaactcaggagctggcaaccatg
tga
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