Salvelinus namaycush (lake trout): 120021628
Help
Entry
120021628 CDS
T07522
Name
(RefSeq) transitional endoplasmic reticulum ATPase-like
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04137
Mitophagy - animal
snh04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120021628
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
120021628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120021628
03009 Ribosome biogenesis [BR:
snh03009
]
120021628
04131 Membrane trafficking [BR:
snh04131
]
120021628
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120021628
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
120021628
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
120021628
Membrane trafficking [BR:
snh04131
]
SNARE
SNARE associated proteins
Others
120021628
Autophagy
Aggrephagy
Other aggrephagy associated proteins
120021628
Exosome [BR:
snh04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120021628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
TIP49
AAA_22
AAA_14
NPHP3_N
RNA_helicase
AAA_28
Vps4_C
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
ATPase_2
IstB_IS21
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
NB-ARC
AAA_lid_PRS2_C
TsaE
ResIII
NACHT
Sigma54_activat
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
Zot
DUF3944
Motif
Other DBs
NCBI-GeneID:
120021628
NCBI-ProteinID:
XP_038821362
UniProt:
A0A8U0PBL8
LinkDB
All DBs
Position
Sna26:5107653..5129826
Genome browser
AA seq
761 aa
AA seq
DB search
MDELQLFRGDTVLMKGKKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPC
PDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKV
VETDPNPYCIAAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLR
HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN
LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA
ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLSDDVDLEQVANQTHG
HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMSSLAVTMDDFRWALSQSNPSALR
ETVVEVPNISWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT
LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA
RGGNVGDGGGAADRVINQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI
PLPDEKSRINILSANLRKSPIAKDVDLDFLAKMTNGFSGADLTEICQRACKMAIRESIEN
EIRRERERQTNPLSMEVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS
RGFGSFRFPTSSAPGAGPSQGSAGGSGGTVFNEDNDDDLYG
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggatgagttgcagctgttcaggggagacacagtgctgatgaaaggaaagaagagacgg
gagacggtatgcatcgtgctctctgacgacacctgctccgacgagaaggtccgcatgaac
agagtggtccgcaacaacctgagagtccgcctgggagatgtcatcagtattcagccatgc
ccagatgtgaagtacgggaagcggatccatgttctgcccatcgatgacactgtagagggg
atcacagggaacctgtttgaggtctacctcaagccctacttcctggaggcctacaggccc
atcaggaaaggggacattttcctggtgaggggaggcatgcgtgcggtggagttcaaggta
gtggagacggatcctaacccctactgcatcgcggccccagacactgtcatccactgtgag
ggcgagcccatcaaacgagaggatgaggaggagtctctgaatgaggttggctatgatgac
attgggggtgtgaggaagcagctggcccagattaaggagatggtggagctgcccctgaga
cacccagcacttttcaaggccatcggcgtcaagcctccaaggggtatcctgctgtatgga
ccccctggaacaggaaagacactgattgcacgtgccgtggccaacgagactggagccttc
tttttccttatcaatgggcccgagatcatgagtaaactggctggagagtctgagagtaac
ctgaggaaggccttcgaggaggctgagaagaatgcccccgccatcatcttcattgacgag
ctggacgccattgcaccaaaaagagaaaagacacacggtgaggtggagaggcgcattgtg
tcccagctcctcacactcatggatggcctaaagcagcgcgctcacgtcatcgtcatggca
gccaccaacaggcccaacagcattgaccccgccctgaggcgatttgggcgttttgacagg
gaggtggacatcggcatccctgacgccacaggcagactggagatcctgcagatacacacc
aagaacatgaaactgtccgacgacgtggacctcgagcaggttgccaatcagactcacggc
catgtgggtgctgacctggccgctctgtgctctgaagccgccctgcaggccatcaggaag
aagatggatctcatcgacctggaggacgaaaccatcgacgcggaggtcatgagctccctg
gctgtcaccatggatgacttcagatgggctctaagccagagcaacccgtcagccctgaga
gagacggtggttgaggtgcccaacatcagctgggaggacatcggaggtctggaggacgtc
aagagggaactccaggagcttgtacagtacccagtggagcacccagacaagttcttgaag
ttcggcatgaccccgtccaagggcgtgctgttctacgggcccccaggttgtggtaagacc
ctgctggccaaagctatcgccaacgagtgccaggcgaacttcatctccatcaaaggacct
gagctgctcaccatgtggttcggagagtccgaggccaacgttcgtgagatcttcgacaag
gctcgtcaggccgccccctgcgtgcttttctttgacgagctggactccatcgccaaggca
cgtggcggcaacgtgggtgatggcggcggcgcggccgaccgcgtcatcaaccagatcctg
acagaaatggacggcatgtccagcaagaagaacgtcttcatcatcggtgccaccaacagg
cctgatatcatcgacccggccatcctgaggcccggaagactggaccagctcatctacatc
cccctgccagacgagaagtcccgcatcaacatcctcagcgccaacctcaggaagtcaccc
atcgccaaggatgtggacttggatttcctggccaagatgaccaatggtttctctggcgct
gacctgacagagatctgtcagagggcctgtaagatggccatcagggagtccattgagaat
gagatcaggagggagagagagcggcagaccaaccccttatccatggaggttgaggaggac
gaccctgtcccagagatccgtaaagaccattttgaggaggccatgcgtttcgcccgccgc
tcagtcagcgacaacgacatccgcaaatacgagatgttcgcacagacgttacagcagagc
agaggcttcggcagcttccggttccccactagctctgcgccaggcgctgggcccagccag
ggctctgctggtggcagcggtggtacagtcttcaacgaggacaacgacgacgacctctat
ggttaa
DBGET
integrated database retrieval system
