Salvelinus namaycush (lake trout): 120021664
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Entry
120021664 CDS
T07522
Symbol
ddx56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
snh03009
]
120021664 (ddx56)
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120021664 (ddx56)
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
Pre-60S particles
Helicases
120021664 (ddx56)
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Phage_YunG-like
AAA_22
Motif
Other DBs
NCBI-GeneID:
120021664
NCBI-ProteinID:
XP_038821413
UniProt:
A0A8U0PA63
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Position
Sna26:complement(9563597..9570984)
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AA seq
560 aa
AA seq
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MATDRLQFHEMGIDDRILKALADLGWAQPTLIQEKAIPLALEGKDILARARTGSGKTAAY
AVPVIQRILTSKQNVREQAVRVLILVPTKELGQQVQAMIRQLTAYCARDVRVADISGKAD
LSAQRPILMEKPDVVVGTPSRVLAHLSAQSLDLQASLETLVIDEADLLFSFGFEADLKGL
LCHLPKIYQSFLMSATLSEDVQALKELLLHNPVILKLQGSQLPDSSQLQQYSVQCEEEDK
FLLIYTLLKLHLVQGKTLVFVGAVERCYRLKLFLEQFSIPTCVLNSELPVHSRCHIITQF
NQGFYDYIIATDEQVLVDPTTTAQAAEGKGKKKKKNAGRAKDKEYGVSRGIDFQNVSNVI
NFDFPTTVESYIHRVGRTARADNPGTALTFISHTELPLLVEVEEALMGENAECALKPYEF
KMEEIEGFRYRCRDAMRSVTKQAVREARLKEIKQELLNSEKLKTYFEDNPRDLQLLRHDK
DLHPAVIKPHLKNVPEYLIPPTLRGVANPMSSRKKRRRREKPKPDGVVKTTFKKDFRSKN
PLKSFRYTGGRSRGGMAGKS
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgacaggctgcagttccatgaaatgggcatagatgatcgcattttaaaggcg
ctggcggacttgggctgggctcagcccactttgatccaggagaaagccattccactggct
ctggagggcaaggacattctagcccgggccaggactggctcaggaaaaacagctgcttac
gctgtgcccgtcatccagcgtatcttgacatccaaacaaaatgtccgtgagcaggcagtg
agagtgttgatcctggttcctaccaaggagctagggcagcaggtacaggccatgatccgc
cagctgactgcctactgtgccagagacgtgagggtggcagacatctccggcaaggctgac
ctgtctgcccagaggcccatcctgatggaaaagccagatgtggtagtggggaccccctct
agggtgctggcccacctcagtgcccagagcctggacctgcaggcctcgctggagaccctg
gtcatagatgaggctgacctgctcttctccttcggcttcgaggccgacctcaagggcctg
ctgtgccacctgccaaagatctaccagtccttcctaatgtcagctactctcagtgaggat
gtccaggccttgaaggaactgctgctgcacaatcctgtgattttaaagctgcagggctcc
cagctgccagacagctcccagctgcagcagtacagtgttcagtgtgaggaagaggataag
ttcctgctcatctacaccctgttgaaactgcacctggttcagggcaagaccctggtgttt
gttggggcagtggagaggtgctacagactcaaactgttcctggaacagttcagcatcccc
acctgtgtactcaactctgagctgcctgtccactccaggtgtcacatcatcacccagttt
aaccaggggttctatgattacatcatcgccacggacgagcaggtattggttgatcccacc
accacagcgcaggccgccgaggggaaagggaagaagaagaagaagaacgcagggagagcc
aaggacaaggagtacggcgtctccaggggaatcgacttccagaatgtctccaacgtcatc
aactttgacttccccaccaccgtggagtcctatatccaccgtgttgggcgaacggcacgc
gcagacaacccaggcaccgctctcaccttcatctcacacacagagctccccctgctggta
gaggtggaggaagcactcatgggagaaaacgcagagtgtgctctgaagccgtacgagttt
aagatggaggagattgagggcttcagataccgctgccgggatgccatgcggtcagtaact
aagcaggcggtgagggaggccagactgaaagagatcaaacaggagctgctcaactcagag
aaactcaagacgtactttgaggacaacccccgagacctgcagctgctgaggcacgataaa
gacctgcaccctgctgtcatcaagccacacctgaagaacgtaccagaatacctcatccct
ccgacgctgaggggagtggccaacccaatgtccagcaggaagaagaggaggaggagagag
aagcccaaacctgacggggtcgtcaagacaacctttaagaaggacttccgaagcaagaac
cccttgaagagtttccgctacactggggggaggagccgagggggcatggctggcaaatcc
tag
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