Salvelinus namaycush (lake trout): 120021882
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Entry
120021882 CDS
T07522
Name
(RefSeq) tenascin-like
KO
K06252
tenascin
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04510
Focal adhesion
snh04512
ECM-receptor interaction
snh04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120021882
04518 Integrin signaling
120021882
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120021882
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
snh00536
]
120021882
Glycosaminoglycan binding proteins [BR:
snh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120021882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_TEN
fn3
EGF_Teneurin
Fibrinogen_C
EGF_2
EGF_Tenascin
Fn3_Dep-1_3rd
DUF7949
Fn3_Dep-1_2nd
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
EGF
Fn3_Dep-1_1st
FN3_Tor_3rd
hEGF
NDNF_C
Motif
Other DBs
NCBI-GeneID:
120021882
NCBI-ProteinID:
XP_038821651
UniProt:
A0A8U0P9H3
LinkDB
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Position
Sna26:12893185..12934318
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AA seq
1700 aa
AA seq
DB search
MGTKSFLGCVFLTLLLNLCQAGLVRNLLRHKRATLTTPGGNNVTLTSADQPVVFNHVYNI
NVPSGSLCSVDLDALGSTSLKPQDAAPPSGLRTTEHTLDGQNQIVFTHRINIPQQECACT
DGLPDLKDLLSRLEMLEGEVSTLRDQCASGDAGCCSVQPVTGEVGTKPYCNGRGNYRADT
CGCICEPGWKGPNCTESECPNNCQDQGRCVDGKCVCFEGFGRDDCSLKVCKVDCGGNGQC
IGGVCVCAKGYTGEDCSQTDCLNNCLGHGKCVDGECVCEEPWTGYDCSELICPNDCYDRG
RCVNGTCYCEEGFTGVDCGEKTCPSDCLGNGFCVDGQCVCSAGYTGEDCSKLTCPSDCND
RGVCFNGMCICNAGYQGEDCSQLACPNNCHNRGQCVNGQCVCNVGYQGEDCSELSCPNNC
QDQGRCVDGKCCVCSAGYTGEDCSKLTCPSDCNDRGVCFNGMCICNAGYQGEDCSQLACP
NNCHNRGQCVNGQCVCNVGYQGEDCSELSCPNNCLNRGRCVNGQCVCDEGFGGEDCSIKI
CPSDCYGSGDCVDGRCVCYAGFTGEDCSELSCPNNCLNRGRCVDGQCVCDEGFTGEDCTE
KHCPNDCLDRGYCVDGKCVCLGGYAGVDCSELTCPDNCNNRGHCDMGRCVNGQCLCDEGY
IGEDCSEVSPPKDLTVTEVTTETVDLTWNNEMLVTEYLIAYVPTSPGGLYQEFRVPGDKT
AATVSELEPGIEYLINVYAILSNKKSIPISARVATNLPEPDGLKFKSVRDTSVEVLWDQL
DIPFDAWELYVRNTKEENGKILTTLPSSQTMYEQSGLGPGQEYEVSVGIIKNNTRGPQST
KIITTRIDGPRQVEVRDVTDCSGLVTWFQPVAQVDGVTVSYGPSSQPTERTSVDLSTSDK
QYSIDSLSPDTEYQVSLISRRGDTTSEPVSEIFTTDLDAPKDLQPLGQTDDSVTLEWRNS
RADVDSYRVKYSPISGGSHGEEVFPRGSGDNTQATITGMKPGTEYGIGVTAVKNERESLP
ATTNAATDLDGPKDLEVSESTETSMNLVWRTPRAKITIYRLVYISRDGRREEVEVPGTAT
TYVLNNLTPGMLYTITLVAERGSKKSTPVTLSASTEDLRPVVANLTVSDVTWDSFNVSWT
PEDGEFESFVIEVTNLQEGLESENLTLSGDAFSLGISGLSPNTSYRIGLYGLHKGSFQEP
VYTEVTTGLGAPRGIRFSEVTESSAIVHWTMPRARVDSYRIIYVPLQGGSPMTVLADGTE
TQALLPNMLPGVTYQVTIFSMKGLEESDPGIDTITTALDRPQGLSAVNVTDTTALLLWQP
TRATVDGYVITYSADSVSPVMEHVSGNTVEFEMGSLVPATHYTVGVYAMREALKSATTTT
EFTTDVDSPRDLAASNVQTDSATLTWKPPRADITGYVLTFTSSDSTVREVVLSPTATSYS
MTQLSGTTDYNVRLQAIAGAQRSRHVTTVFTTIGVLYRYPKDCSQALLNGDTTSGIYTIY
VGGEESQPIQVYCDMTTDGGGWMVFLRRQSGKLEFFRNWKNYTGGFGDINGEFWFGLANL
HKMTTAGQYELRVDLRDNGESAYAQYDKFTIAEPRSRYKIHIGGFSGTAGDSMTYHQGRP
FSTYDNDNDIAVTNCALSYKGAFWYKNCHRVNLMGRYGDNSHSKGINWFHWKGHEHSIQF
AEMKIRPVNFRNFESRRKRS
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgggtactaaaagctttttagggtgtgtcttcctgactctccttctcaacctctgccag
gctgggctggtgagaaatttacttaggcataaacgggcgaccttgaccacccctggcgga
aacaatgtgaccctgaccagcgctgaccaaccagtggtcttcaaccacgtctacaacatc
aacgtcccttccggctcactatgctcagtggacctggatgccctaggaagcaccagcctc
aagccccaggacgcagctccaccttcaggcctccgcaccaccgaacataccctggatggg
cagaaccagatagttttcactcaccgcattaacattcctcagcaggagtgtgcatgcact
gatgggctcccggatctgaaggacctcctgagcagattggagatgctggagggagaggtg
tccacgctgagagatcaatgcgctagtggagacgctggctgctgcagcgttcagccagtc
acaggtgaggtggggaccaagccttattgcaatggccgtggcaactacagagctgacacc
tgcggttgcatttgcgagcctggctggaagggacccaactgcaccgagtctgaatgcccc
aacaactgccaggaccaaggtcgctgtgtggatgggaagtgcgtctgctttgagggcttt
ggcagggacgactgttcactcaaggtttgcaaagtggactgtggtgggaacggacaatgt
attggtggggtctgtgtctgtgccaagggttacactggagaggactgttctcagacagac
tgcctgaacaactgcctaggccatggaaagtgtgtggacggggagtgtgtgtgtgaagag
ccctggacgggctacgactgctccgaactcatctgccccaatgactgctacgaccgcggc
cgctgcgtcaatggaacctgctactgcgaagaaggattcaccggggtggactgtggggag
aaaacctgcccaagcgactgcctgggaaatggtttctgtgtggacggccagtgtgtctgc
agcgctggctacactggagaggactgctctaagctcacctgccccagtgactgcaacgat
agaggtgtctgctttaatggaatgtgtatctgtaatgctggctaccaaggagaggattgt
agccagctggcttgccccaacaactgccataacaggggacagtgtgtcaacgggcagtgc
gtctgcaatgtaggctaccagggagaggactgttctgagctctcctgccccaacaactgc
caggaccaaggtcgctgcgtggatgggaagtgctgtgtctgcagcgctggctacactgga
gaggactgctctaagctcacctgccccagtgactgcaacgatagaggtgtctgcttcaat
ggcatgtgtatctgcaatgctggctaccaaggagaggattgtagccagctggcttgcccc
aacaactgccataacaggggacagtgtgtcaatgggcagtgcgtctgcaatgtaggctac
cagggagaggactgttctgagctctcctgccccaacaactgcctcaaccggggccgctgt
gtcaacggacagtgtgtgtgcgatgaagggttcggtggtgaggactgcagcatcaagatc
tgcccctcagactgctatggcagtggagattgtgtggatggccggtgtgtctgctatgct
ggcttcaccggtgaggactgcagcgagctgagctgccccaacaactgcctgaaccgcgga
cgctgcgttgacgggcagtgcgtctgcgacgagggctttacaggggaagactgcactgag
aagcactgtcccaatgactgcctggacaggggatactgcgtggatggcaaatgtgtctgc
ctggggggctatgcgggtgtcgactgctctgaactcacctgccctgataactgcaacaac
agggggcactgtgacatgggccgctgtgtgaatggacaatgtctctgtgatgagggatac
atcggagaagactgctcagaagtttcacctccaaaggacctgactgtaacagaggtcacc
accgagacagtggatctgacctggaacaacgagatgctggtgacagagtatctgattgca
tatgtgcccactagtcctgggggtctgtaccaggagttcagagtgcccggagacaagact
gctgccacagtcagcgagctggagcccggcatcgagtacctgatcaacgtctatgccatc
ctcagcaacaagaagagcatcccaatcagcgccagggtggccacaaatctaccagagcca
gatggcttgaagttcaaatcggtgagggacacctcagtagaggtgttgtgggatcagctg
gacattccctttgatgcctgggagctctatgtccgtaacacgaaagaggagaatgggaag
atcctgacaacccttccatcctcccagactatgtatgagcagtccgggcttggtcctggt
caggagtacgaggtctcagtgggcatcatcaagaacaataccagaggacctcagtctact
aaaatcattaccaccaggattgatggccccagacaggtagaggtgcgtgacgtgacggac
tgctcaggcttggtcacctggttccagcccgtggcccaggtggacggtgtcactgtgtcc
tatggccccagctcccagcccacagagaggaccagcgtggacctttccacctcagacaaa
cagtatagcatcgacagcctcagcccagacactgagtaccaggtgtccctgatctcaagg
aggggagacaccaccagtgagccagtctctgagatattcaccacagacctggacgccccc
aaggacctgcagcccctgggccagacagacgacagcgtcacactggagtggagaaacagc
cgggcagatgttgacagctacagggtgaagtacagccccatctctgggggttcccatggc
gaggaggtgttcccccgtgggtcaggagacaacactcaggccaccatcactggaatgaaa
ccgggtacagaatacgggattggtgtgaccgcagtgaagaacgagagggagagccttcct
gccactacaaacgcagccaccgatctcgatgggcccaaggacttggaagtgagcgagtcc
acagagacaagcatgaacctggtgtggaggacacccagagccaagatcaccatctacagg
ctggtgtacatctccagggacggtcgaagggaggaggtggaggtccctggaactgccacc
acctacgtcctgaacaacctgacccccggcatgctgtacaccattaccctggtcgctgag
aggggctcaaagaagagcacacccgtaaccctgtccgcatctacagaggacctgaggcct
gtggtggccaacctcacagtctctgacgtgacatgggacagcttcaatgtgtcctggact
cccgaggacggggagtttgagagctttgtcattgaggtgacaaacttacaggaaggttta
gagagcgagaacctcaccttgtctggtgatgccttcagcctgggcatttctggcctgagt
cctaacacctcgtataggattggcctgtacgggctccacaagggctccttccaggagccg
gtgtataccgaagtcactacaggcctgggtgctccaaggggcatccgcttctctgaggtg
accgagtcctcggccatagtccactggaccatgcctcgtgccagagtggacagctaccgc
atcatctatgtgcccctccaaggaggtagcccaatgacagtgctagcggatgggactgag
acccaggccttgctgcctaacatgttgccaggggtgacctaccaggtgaccatattctcc
atgaagggcctggaggagagtgacccagggatagacaccatcaccacagctctggacagg
cctcagggtctttctgctgtcaacgtcactgacacgaccgccctgctgctatggcaaccc
actcgggccactgtcgatggctacgtcatcacctacagtgcagattcagtgtccccagtg
atggagcatgtttctgggaacacagtggagtttgagatgggctctctggtccctgccacc
cattacacagttggggtatacgccatgagggaggcactgaagagtgccaccaccaccacc
gaattcaccacagatgtggattctcctcgtgacctggcagccagtaacgtccagacagac
agtgccactctcacttggaagcccccgcgtgccgacatcaccggatacgtcctcaccttc
acctcatctgacagcacagtccgggaagtggttctgagccctacagccacatcatacagc
atgactcagctgagtggcactaccgactacaacgtcaggctacaggccatcgctggagcc
cagcggagccgccacgtcactaccgtcttcaccaccatcggagtgttgtacagataccct
aaggactgctcacaggctctgctgaatggagacaccacctctggcatctacaccatctac
gtgggaggagaagagagccagcccatccaggtctactgtgacatgaccaccgacggaggt
ggatggatggtgttcctgaggcgccagagtggaaagctggagttcttcaggaactggaag
aattacactggtggctttggggacattaatggtgaattctggtttggtctagccaacctc
cacaagatgacaacagcaggccagtacgagctgcgtgtggacctgagggacaacggggag
tcggcctatgctcagtatgacaagttcacgatcgcagaaccccgtagccgctacaagatc
cacataggagggttcagcggcacagcaggtgactctatgacttatcaccagggccggccc
ttctccacgtatgacaatgacaatgacatcgctgtcaccaactgtgccctgtcctataag
ggtgccttctggtacaagaactgccatcgtgtcaaccttatgggaagatatggtgacaat
agtcacagcaagggtatcaactggttccattggaagggacacgagcattcaatacagttt
gccgaaatgaagattagaccagtcaacttcagaaactttgaaagtcgaaggaaaagatca
tag
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