Salvelinus namaycush (lake trout): 120022140
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Entry
120022140 CDS
T07522
Name
(RefSeq) collagen alpha-2(I) chain-like isoform X1
KO
K06236
collagen type I alpha
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04510
Focal adhesion
snh04512
ECM-receptor interaction
snh04518
Integrin signaling
snh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120022140
04518 Integrin signaling
120022140
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120022140
09142 Cell motility
04820 Cytoskeleton in muscle cells
120022140
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
snh00536
]
120022140
Glycosaminoglycan binding proteins [BR:
snh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120022140
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
120022140
NCBI-ProteinID:
XP_038821922
UniProt:
A0A8U0PBP7
LinkDB
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Position
27:10436087..10460149
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AA seq
1356 aa
AA seq
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MLSFVDNRILLLLAVTSFLASCQSGGLKGPTGEKGPRGDRGPQGRNGRDGKAGLPGVAGP
PGPPGLGGNFAAQFDGGKGSDPGPGPMGLMGSRGPNGPPGSPGPQGFTGHAGEPGEPGQT
GSIGARGPSGSAGKPGEDGNNGRPGKPGDRGGPGTQGARGFPGTPGLPGMKGHRGYNGLD
GRKGESGSGGAKGETGAHGANGNPGSAGSRGLNGERGRAGPAGPAGARGADGSTGPAGPA
GPLGAAGPPGFPGAPGPKGEIGGAGANGPSGPQGGRGEPGTNGAVGPVGPVGNPGNNGIN
GAKGAAGLPGVAGAPGFPGPRGGPGPQGPQGSTGARGLGGDPGPSGQKGDSGAKGEPGHS
GVQGAAGPAGEEGKRGSTGEVGATGPAGLRGARGGAGTRGLPGLEGRGGPIGMPGARGAT
GPGGIRGGPGDAGRAGESGLTGARGLPGNSGQGGPPGKEGPSGAAGLDGRTGPPGPTGPR
GQPGNIGFPGPKGPGGEAGKGGDKGPNGATGLRGGPGADGNNGAPGPAGVVGNAGEKGEQ
GPSGAPGFQGLPGPAGPAGEAGKAGNQGMHGDQGLPGSAGVKGERGNSGPAGSAGSQGAI
GARGPAGTPGTDGGKGEPGSVGIAGGPGHQGPGGMPGERGAGGTPGPKGEKGEGGHRGLE
GNMGRDGARGAPGPSGPPGPSGANGEKGESGSFGPAGPAGLRGPNGERGEGGPAGPPGFA
GPPGSDGQSGPRGDKGPAGGKGDVGPAGPSGPAGQSGPSGASGPAGPPGGRGDAGPSGLT
GFPGAAGRVGGPGPAGISGPPGSAGPAGKDGPRGLRGDSGPGGPQGENGQIGPSGIAGDK
GPTGESGPPGAPGTAGPQGVLGPSGFVGLPGSRGDKGLPGGPGAVGEPGRLGPAGASGPR
GPAGNIGMPGMTGSQGEAGREGSTGNDGPPGRPGTAGFKGDRGEPGSPGALGSSGQPGPN
GPSGAVGRPGNRGEAGPNGNGGPVGAAGARGAPGPAGPRGEKGGAGEKGDRGMKGLRGHG
GLQGMPGPNGPSGETGSAGITGPAGPRGPAGPHGPPGKDGRAGGHGAIGPVGHRGSPGHL
GPAGPPGSPGLPGPAGPAGGGYDQSGGYDEYRADQPSLRAKDYEVDATIKSLNSQIENLL
TPEGSKKNPARTCRDIRLSHPEWSSGFYWIDPNQGCIADAIKAHCDFSTGHTCIHPHPES
IARKNWYRSSENKKHVWFGETINGGTEFAYNDETLSPQSMATQLAFMRLLANQATQNITY
HCKNSVAYMDGENGNLKKAVLLQGSNDVELSAEGNSRFTFNVLEDGCTRHTGQWSKTVIE
YRTNKPSRLPILDIAPLDIGGADQEFGLNIGPVCFK
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggataaccggattctgttgctgcttgcagtaacttcatttctagca
tcatgccaatcgggtggactcaagggcccaacgggagagaaaggacctcgaggtgacagg
ggtccccaaggccgtaatggaagagatggtaaagctggactccccggcgttgccggcccc
cctggtccccctggacttggaggaaactttgctgctcagtttgatggaggaaaaggcagc
gaccccggacctggacccatgggtttgatgggatctagagggcccaacggacctcccgga
tcccctggaccccaaggattcacaggacacgctggagagcctggagagcctggacagact
ggctccattggtgctcgtggaccttctggatccgctggcaagcccggtgaggatggtaac
aacggaagacctggaaagcctggtgacagaggtggccctggaactcagggtgctcgtgga
ttccccggaactcctggacttcctggaatgaagggacacagaggttacaatggtctggat
ggacgcaagggagagtctggttcaggaggtgctaagggtgagacaggtgcccatggagct
aacggaaaccccggatcagctggttctcgtggtctgaatggtgagagaggccgtgccggc
cctgctggccccgctggtgcccgtggtgctgatggaagtaccggacccgccggccctgct
ggtcctcttggagcagctggtccccctggtttccctggagcccctggccccaagggagag
attggaggtgctggagccaatggcccatccggacctcagggaggcagaggagagcccggt
actaatggagccgttggccccgtcggtcccgttggtaaccctggtaacaacggtatcaac
ggcgccaagggagctgctggtctccccggtgttgctggagcccctggtttccctggccca
agaggaggtcctggcccccagggccctcagggatccactggagctagaggccttggtggt
gaccctggaccctctggacaaaaaggagattctggtgctaagggagagcctggtcactct
ggtgtccagggtgccgctggtcccgctggtgaggagggaaagagaggctcaactggtgag
gttggtgccaccgggcccgctggtctgcgtggagctagaggaggtgctggaactcgtggt
ttgcctggtctggagggaagaggtggtcccattggtatgcctggagctcgcggagccacc
ggccctggtggtatccgtggaggccctggtgatgccggtcgtgctggcgagtctggtctg
actggagccagaggcctgcccggaaactctggacagggtggacccccaggcaaggaaggc
ccatctggtgctgctggtctggacggacgcactggtccccccggcccaactggacccaga
ggccagcccggtaacatcggattccccggccccaagggacctggaggtgaggctggcaag
ggtggtgataagggaccaaatggtgcaactggtctgagaggcggcccaggtgctgatggt
aacaatggagcccccggccctgctggagttgttggtaacgctggtgagaagggagagcag
ggaccctctggtgctccaggtttccagggtctgcccggccccgctggacctgctggagag
gctggcaaagctggcaaccaaggtatgcacggagaccagggactccctggatctgctggc
gtcaagggagagcgtggaaactctggtcctgctggctctgctggatctcagggagccatc
ggtgctcgtggacctgctggaactccaggcaccgatggtggcaagggagagcctggttct
gtcggcattgctggtggccctggacaccaaggacccggtggcatgcccggtgagcgcggt
gccggtggtactcctggacccaagggtgagaagggtgagggtggacacagaggacttgag
ggtaacatgggaagagatggagcccgtggtgcccccggaccaagtggaccccctggacct
tccggtgctaatggtgaaaagggtgagtctggctccttcggccctgccggacctgctggt
cttcgtggacccaatggagagcgtggagagggtggacctgccggacctcccggcttcgcc
ggaccccctggttctgatggtcagtctggacctagaggagacaaaggacccgctggtgga
aagggagatgtcggccccgccggcccttctggacctgctggccaatctggaccttctggt
gctagtggaccagctggcccccctggtggtcgtggtgatgctggaccttctggtctgact
ggtttccctggtgctgccggtagagttggaggccccggtcccgctggtatttctgggccc
cctggctccgccggtcccgctggtaaggatggccctcgtggtctccgtggtgattctggt
cccgggggacctcagggagagaatggacaaattggaccctctggtatcgctggagacaag
ggacccactggagagagcggtcctcccggtgctcctggtaccgctggaccccaaggtgtg
ctcggaccctctggcttcgttggtctgcctggttcccgtggtgacaagggtcttcctggc
ggtcctggtgctgtgggtgagcctgggagacttggacccgctggtgcctctggaccccgt
ggtcccgctggtaacattggcatgcccggtatgactggttctcagggagaggctggacgt
gagggtagcactggcaacgatggacctcccggccgtcccggaactgctggcttcaagggt
gaccgtggtgagcctggttctcctggagcccttggaagctctggtcaacccggacctaac
ggaccctccggcgccgtcggcagacctggaaaccgtggagaggctggcccaaatggaaat
ggtggtcccgtcggtgctgctggtgcccgtggtgcccccggccccgctggtccccgtgga
gagaagggtggggctggagagaaaggagacagaggcatgaagggtctgcgtggacatggt
ggtctacagggaatgcccggaccaaacggaccatctggtgagactggctctgctggtatc
actggacctgctggacccagaggccctgccggaccccatggtccccctggtaaggatggt
agagctggaggtcatggtgctatcggacctgttggacaccgtggttcccctggacatctc
ggacctgctggtccccccggctctcctggtcttcccggacccgcaggtcctgctggtggc
ggatacgatcagtctggtggttacgatgagtacagagccgaccagccctctctcagggcc
aaggactacgaggtggacgccaccatcaagtccctaaactcccagatcgagaacttgctc
acccccgagggttccaagaagaaccccgcccgtacctgcagagacatcagactcagccac
cccgaatggagcagcggtttctactggatcgaccccaaccagggctgcattgctgatgcc
atcaaggcccactgtgacttctccaccggacacacctgcatccaccctcacccagagagc
atcgcccgcaagaactggtacaggagctctgagaacaagaagcacgtctggttcggagag
accattaacggtggtactgagtttgcgtacaatgatgagaccctgagcccccagagcatg
gccactcagctggccttcatgcgtctcctggccaaccaggccacccagaacatcacgtac
cactgcaagaacagcgtggcgtacatggacggagagaacggcaacctgaagaaggccgtg
ctcctgcagggctctaacgacgtggagctgagtgccgagggcaacagtcgcttcactttc
aacgttctggaggacggctgcactagacacactggccagtggagcaagacagtcattgaa
tacagaacaaataaaccatctcgcctgcccatcctcgacattgcacctttggacattggt
ggagctgatcaagagtttggtttgaacattggcccagtctgtttcaaataa
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