Salvelinus namaycush (lake trout): 120022146
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Entry
120022146 CDS
T07522
Name
(RefSeq) low-density lipoprotein receptor-related protein 12-like
KO
K20050
low-density lipoprotein receptor-related protein 3/10/12
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120022146
Membrane trafficking [BR:
snh04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
120022146
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Paralog
Gene cluster
GFIT
Motif
Pfam:
CUB
Ldl_recept_a
Motif
Other DBs
NCBI-GeneID:
120022146
NCBI-ProteinID:
XP_038821931
UniProt:
A0A8U0PCG9
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Position
Sna27:36677626..36711902
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AA seq
886 aa
AA seq
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MAYYTLSSNGISSSSWISLHMFLFIFTGNAVCSQHNENVYVSGISNACGDVAEQIRASSG
VITSPGWPFQYPSRINCSWNIRANPGEIITISFQDFEIQSSHRCGLDWISISTYKNLDGY
RACGSSIPAPYISSQDHVWIKFHSDDIMTGKGFRLSYITGKSEMISCDLDQFHCSNGKCI
PESWKCNTMDECGDNSDEELCVQPNPSAAFSFQPCAFNQFPCLSRYTRVYTCLHESLKCD
GSIDCQDLGDEIDCDVPTCGEWLRNFYGTFSSPNYPDFYPPGSNCTWLIDTGDHRKVILR
FMDFKLDGTGYGDYVKVYDGLEENPRRLLRVLTAFDSRAPMAVVSSSGQLRVHFYADKIN
AARGFNVTYQVDGFCLPWEIPCGGNWGCYTEQQRCDGYWHCPNGRDEVNCSTCQEDEFPC
SRNGACYPRSDRCNYQNRCPNGSDEKNCFFCQPGNFHCKNNRCVFESWVCDAQDDCGDGS
DEESCPVIVPTRVITAAVIGSLICGLLLVIALGCTCKLYSLRMFERRSFETQLSRVEAEL
LRREAPPSYGQLIAQGLIPPVEDFPVCSGNQASVLENLRLAVRSQLGFTSIHLPTSGRHS
NIWQRLFNFTRSRRSGSLALVSADGEDNSTSSGNGGCSAHEPDRAGPHRGLLPLDSDDTD
TESERRDVPGAVGGLVAPLPVKTPPATAVEAIVSVSTNSTTPAPLPSRRDSHRARASPAV
VETHTIETPGGEAAEPQGTATGRSQLSSALSRVTRSLRWVRFSLGRSGGSSGGGTQNLSP
LRHLEHGAGTREDEDDVELLIPVSDAASDTDSTSETSRLLSLEVGLDQAAPRLSSPASLR
SGRVSLGRNGPCEHCSMVHTAQIPDACVEATSKTETNSDDELLLLC
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggcctactacactttgagctcaaatgggatttcatcttcttcatggatatctctacac
atgttcctcttcatattcactggaaatgcagtttgctcccagcacaacgagaacgtttac
gtatcggggatttctaatgcctgtggagatgtggcagagcagatcagggcgtccagtgga
gtgatcaccagccctggctggcccttccagtacccctccaggatcaactgcagctggaac
atcagggctaaccctggggaaatcatcaccatcagtttccaggactttgagatccagagc
tctcaccgttgcggcctggactggatctccattagcacctacaagaacctggacggatac
cgggcatgtggctcatccatcccagccccttacatttcctcccaggaccacgtgtggatc
aagttccactcggacgacatcatgaccggcaagggcttcaggctgtcttatataacagga
aaatcggagatgatcagctgcgacttggaccagttccactgttccaacggaaagtgcatc
ccggagtcgtggaagtgcaacaccatggacgagtgtggtgacaactctgacgaggagctg
tgtgtacagcccaacccctcggcagcattctccttccagccctgtgccttcaaccagttt
ccctgcctgtcccgctacacccgcgtctacacctgcctgcacgagtcgctcaaatgtgac
ggcagcatcgactgccaggaccttggtgacgagatcgactgtgacgtgcccacctgcggc
gagtggctgcggaacttctacggcaccttcagctcgcccaactaccctgacttctaccca
ccaggcagcaactgcacctggcttatcgacacaggcgaccaccgcaaggtgatcctgcgt
ttcatggacttcaagctggacgggacgggctatggggactacgtcaaggtgtacgacggc
ttggaagagaaccctcgccgtctactccgcgtcctcacagccttcgactcccgtgccccc
atggccgtggtctcgtcctcgggccagctgcgcgttcacttctacgctgacaagatcaat
gcggcaaggggcttcaatgttacctaccaggtggacggtttctgtctgccctgggagatc
ccgtgtgggggcaactggggctgctacacggagcagcaacgctgcgacggttactggcac
tgccccaatggccgcgacgaggtcaactgtagcacctgccaggaggatgagtttccctgc
tccagaaatggcgcctgctacccgcgctcggaccgctgcaactaccagaaccgctgcccc
aacggctcggacgagaagaactgcttcttctgccagccgggcaacttccactgtaagaac
aaccgctgtgtgttcgagagctgggtgtgtgacgcgcaggacgactgcggcgacggaagc
gacgaggagagttgtccggtcatcgtgcccacacgggtcatcacggcggcggttatagga
agtctcatctgtggcctgctgctggtcatcgctctgggctgcacctgcaagctctactcc
ctccggatgtttgagcgcaggtcatttgagacccagctgtccagggttgaggctgagctc
ctgaggagggaggctccgccctcctatggtcagctgatcgcccagggcctcatccccccc
gtggaggacttccctgtctgctccggcaaccaggcgtctgtgttggagaacctgaggttg
gctgttcgctcccagctgggtttcacctccatccacctgcccacctccggtcgccacagc
aacatctggcaacgcctcttcaacttcacacgctcacggcgctccggctcactggccctg
gtgtctgctgacggcgaggacaacagcaccagcagcggtaacggtggctgctcggcccac
gaacccgacagggctggaccccaccgggggctgctgcccctcgactcggacgacacagat
acagagagcgagcgtcgggatgtccctggggccgtgggggggcttgtagcccccctcccc
gtaaagacccctccggcaactgcagtggaggccatcgtctcggtgtcgacaaactccacc
actcccgcccctcttcccagccgtagggacagccaccgggctagggccagcccggcagtg
gtggagacacacaccatagagaccccagggggagaggcagcagagcctcagggtactgcg
accgggaggagccagctgagcagtgccctgagccgcgtcacccgcagcctgcgctgggta
cgtttctccctgggccgctccggaggctcctcgggtgggggaacccagaacctcagccct
ctgaggcacctagagcatggagcagggaccagggaggacgaagacgacgtggagctgctt
atccctgtgtcggatgctgcctcggacactgactccaccagcgagacctccaggctcctc
agcctggaggtaggtctagatcaggctgccccccgcctatcatccccagcctctctcagg
tcaggccgggtgtccctgggccggaacgggccctgtgaacactgtagcatggttcacacc
gcacagatcccagacgcctgtgtggaggccacaagcaagacggagaccaatagcgatgac
gagttacttctgctctgctaa
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