Salvelinus namaycush (lake trout): 120022148
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Entry
120022148 CDS
T07522
Name
(RefSeq) nuclear pore complex protein Nup153-like isoform X1
KO
K14296
nuclear pore complex protein Nup153
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
snh03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120022148
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120022148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120022148
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120022148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup153
Zn_ribbon_RanBP
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
120022148
NCBI-ProteinID:
XP_038821933
UniProt:
A0A8U0PCC5
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All DBs
Position
Sna27:11466404..11496580
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AA seq
1413 aa
AA seq
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MAATGGGKIRSRRYHIASKPYAKSKQQQSGLISRVTDTVKSIVPSWMQKYFTNGEAAEGG
GAMLGEEPNSQAPPNGSEEVDPLPDGRDSAEPATSNTEPSTSRVSLNFQDVLSRPPLNRS
YLHFPSLDASPALGSPSSLFSQPSTSSAPFAGGPFTGASTSFSLVKEVKDNSSQHEDDNI
STTSGFSSRASEKDVPNFKTTSLPQLCFPEMDRTHSGPQQSQSSLKKPAFNLSVFGTSST
STLNSSVLNSSQLGDSPFYPGKTTYGGAAAVRTARSRTATPYQAPLRRQIKAKPAGALPC
GVTSATARRILQSLERMSSPLADAKRIPSTVSSPLSKSPDGSTLDLSHFQAPKKRLDFPL
PPVQKLVIPAAALVSGSRSMSFRPSLTPAGLTQTPGGTPTRRSPLIPEAVAGPCQSTSSS
LPTYPLSSTPATSSTGSGGGKMKRERTSTRPSSKRPEDEIAELPALPANTSISLLSFSFP
NPKPVVTSTPVLVEPVTNEVPLTTAPSTPPSTPFTFSSPIVMTTAASPPSFSLSSGFTFS
APVVKTGLSLSNGKMVTPVVAAVKHAASESMEEFEGPFKPAKMLKQGSVLELLKGPGFTV
PVTQTSPVPKAPQETPALSTTTTPSLGDLFKAPTGSWDCDVCMVRNKPTATKCVACMTPH
PNSTLAKTDSEHFTTLSGLEGSTTTTAAGFGALFTKSAGSWDCDTCLVQNKPQAVKCVAC
ETAKPGTGVKATLTQHAFSEAKTLPAAAPLLGFGDKFKKPEGAWECDMCMVQNKAQDIKC
VSCMSTKPGVTAATSSLTPAPVSTAPLLGFGAQFKKPDGAWECDVCCVQNKGADQACVAC
QTPKPGAKVEPKAFGSSSFGIQSLSDTGSGGFKFGMGVSSDSASSSGGFKFGGTLSDSSS
GGFKFGAAASSDTTSTDTSSSAGFKFGSSTEGFKFGASTASTPEVDEGGKAETLSMGARF
KFGISGGISFCTAAAASTEIKPSDGGFSFGLSKPTTTTSTLSLPVSTEKDSGASTETTTT
ASAPIFGKLAEPPALATPLGGSIFEESLEKDQDPFTFGKPEKEASMGSGFLFSAASKEAE
ASAPPGGFSFFMVDPSADQPKAPTFTFGKLADSETPAAKAPKPSFSFGQSATDAAASKPV
FGFMATTTTSTSTTPAPRLFGPTSSTTPAPIPAPSTFLFGQNASSEATPAKSFLFGQSQD
SLPAPAASLNPGPAQPFLFGSGPNTAAPSFAFGAAPLSTASSTAPSAAPAPFVFSPASSS
GFGSGQAPTFGQGTSQPNAPAFGSPAPSPFSATASQPPAFGGKANSVPVFDQQANSMPAF
GSSTSATPGGGFQFGGVSAFGTSSNSTGVFAFGGAPGGSPAPSATPSMAPQPSAPGGGYN
FIGSTKSTTFTAAPAGQNSIARRKIKTAVRRKK
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atggcggccacgggtggagggaaaattagaagcagaagatatcatatcgcttctaaacct
tacgccaaaagcaaacagcagcagtcaggcctgattagtcgagtgacagacacagtcaag
agcatcgttccttcctggatgcagaaatacttcacaaacggggaggctgcagaaggggga
ggggccatgttgggggaggagccgaacagtcaggcccctcctaatggcagcgaggaggta
gacccccttcctgatggacgggactctgcggagcccgctaccagtaatacagagccttcg
acaagcagggtatccctgaacttccaggatgttctgtcgaggccccccctcaaccgctcc
tacctccatttcccctccctggacgcctccccggccctggggagcccaagctcccttttc
tcccagccctccacatcctccgctcccttcgctgggggccccttcactggggcgtcgacc
agcttctccctagtcaaggaggtcaaggacaatagctcccagcacgaggatgacaacatc
tccaccaccagcggcttctcatcacgtgcatcagaaaaagatgtaccaaactttaagacc
acgtcgctaccccagctctgttttccggagatggaccggacacactctgggccccagcag
tcccagtccagtctcaagaagcctgcgttcaacctgtctgtctttgggacttcctccact
tccacgttgaacagttcagtgctgaactccagtcagttgggggattcccccttctaccca
gggaagaccacctacgggggagcagctgctgttagaacagcccgctcacgcacagccaca
ccttaccaggctccattgcggagacagatcaaggccaagcctgctggggctctgccctgt
ggggtgaccagtgctaccgcccgacgcatcttacagtccctggagcgcatgtccagcccc
ctcgctgatgccaagagaatcccctctacggtgtcctctcccttgtcaaaatcccctgat
ggcagcactctggacctttcacatttccaggcccccaaaaaacggctggactttcccctc
cccccagtccagaagttggtaatcccggctgcagcgttggtgtctgggagccgctcaatg
tccttcaggccctctctgacccccgcgggcctgacccagacccccggaggcacgcccaca
agacgatcccctctgattcctgaagcagtggcaggcccttgtcaaagcacaagcagcagc
ctacccacctaccctctgtccagcactcctgcaaccagcagcacagggtcaggaggaggg
aagatgaagagggagaggaccagcacaagaccctcgtccaaacgacctgaagacgagatt
gctgagcttccggccctgccggccaacacctcaatcagtctgctcagcttcagcttcccc
aaccccaagcctgttgtcacttccacacctgtcctggtggagcccgtcactaatgaggtg
ccactgactacagccccctctacccctccctccacacctttcactttctcctcccctatt
gtcatgacaactgctgctagcccaccgtccttctccttgtcttctggatttaccttcagt
gcacctgtagtgaaaacgggtctgtcactatccaacgggaagatggtcaccccagtagtg
gcagcagtgaagcatgctgccagtgagagcatggaggagtttgaagggccgtttaaacca
gccaagatgttgaaacagggcagtgtgctggagctcctcaaaggacctgggtttaccgtt
cctgttactcagacctcccctgtccccaaagccccccaggagaccccagccctgtccacc
accaccaccccctcccttggggacttgttcaaagcgccaacaggctcctgggactgtgac
gtctgcatggtgaggaacaaacccactgccacaaagtgtgtggcctgtatgaccccacat
ccaaactctactttagcgaagaccgacagtgaacatttcacaacgttgtccgggctggag
ggttccaccactactaccgctgctggttttggagccctgttcacaaagtctgcgggaagc
tgggactgtgacacttgtctggttcagaacaagcctcaagcggtcaaatgtgtggcctgt
gagacagccaagcctgggactggagttaaagccacactgactcagcatgccttctcggag
gctaagactctgcctgctgctgccccccttttgggcttcggggacaagtttaagaagcca
gagggagcgtgggagtgtgacatgtgcatggtgcagaacaaggcgcaggacatcaagtgt
gtttcctgtatgagcactaagccaggagtgacggcagcgacttcatctctaactcccgcc
cctgtcagcaccgctcctctactaggctttggggcccagttcaagaagccagatggagcg
tgggagtgtgacgtgtgctgtgttcagaacaagggagcagaccaggcgtgtgtggcctgt
cagacccctaagcctggggctaaagtagagcctaaagcattcggttcctcgtcatttggt
atccagtccttgtctgacaccggctcagggggattcaagtttggcatgggggtgtcatcg
gactcggcctctagttctgggggctttaaattcggcggcaccctctctgactcctcttca
gggggcttcaaattcggtgcagctgcctcatcagacaccacctcaacagacaccagcagc
tctgcaggcttcaaattcggcagctccacagagggcttcaaatttggagcttctactgct
tccacccctgaagtggatgaggggggaaaggctgaaaccctgagtatgggtgcccggttc
aaatttggcatcagcggtgggatctcgttctgcactgcagcagctgctagcacggagatc
aaaccctcggacggagggttctcctttggactatcaaaaccgacaaccaccacctctact
ttaagccttcctgtctctacagagaaggacagtggagcttctacagaaaccaccacaaca
gcatcagctcctatttttgggaagctggctgagcctcctgccctggccacaccactaggg
ggcagcatatttgaggaatcgctagaaaaagaccaggaccctttcacctttgggaagcct
gagaaggaggcctctatggggtctgggttcctgttcagtgctgctagtaaagaggcggag
gcatcggctccccctggaggcttttccttctttatggtagatccatctgcagaccagccc
aaagcacctaccttcacctttgggaagctggcagacagcgagaccccagcagcaaaagcc
cctaagccctcattcagctttgggcaaagtgctacagatgctgcagcctcaaagccagtg
tttgggttcatggcaaccaccaccacctctacttccaccacccctgctcccaggctgttt
gggcccaccagcagcactaccccagcacctatcccggcccccagtaccttcctgttcggg
cagaatgcctcaagtgaggccaccccagccaagtccttcttgtttgggcagagccaggac
agcctgcctgcccctgcagcttccctgaaccctggcccggctcaaccattcctgtttggg
tctggacctaacactgctgctccctccttcgcttttggagcggcaccgctctccactgcc
tcatctacagctccatcagcagcccctgctccgtttgtattcagccctgcctcctcctct
ggctttgggtcggggcaagctcctacctttggtcagggtacctcccagcccaatgcccct
gcgtttggttctcctgccccgtcccccttctctgccacggcctcacagcctcctgccttc
ggggggaaggccaactctgtccctgtgtttgaccagcaagccaactccatgcccgctttt
gggtcatccacctctgccacaccaggtggcggtttccagtttggaggagtcagtgcgttc
ggcacgtccagtaacagcacgggggtgtttgctttcggaggggcaccaggagggtccccc
gccccttctgccacaccctccatggcaccccaacccagtgcacctggaggtggctataac
tttattgggtcaacaaagagcaccaccttcactgcagcccctgcaggacagaattcaatc
gctagacgcaagatcaaaacagctgtccggcgtaagaagtaa
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