Salvelinus namaycush (lake trout): 120022272
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Entry
120022272 CDS
T07522
Name
(RefSeq) E3 ubiquitin-protein ligase RING2-A-like
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120022272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120022272
03036 Chromosome and associated proteins [BR:
snh03036
]
120022272
Enzymes [BR:
snh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120022272
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120022272
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
120022272
Noncanonical PRC1 (PRC1.1)
120022272
Noncanonical PRC1 (PRC1.3/1.5)
120022272
Noncanonical PRC1 (PRC1.6)
120022272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAWUL
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
zf-Nse
zf-C3HC4_4
zf-RING_6
zf-RING_4
zf-RING_5
RING_XB3-XBAT31
zf-rbx1
zf-UDP
DUF6437
TRAF3_RING
DUF4653
zf-C3HC4_5
Sina_RING
Motif
Other DBs
NCBI-GeneID:
120022272
NCBI-ProteinID:
XP_038822102
UniProt:
A0A8U0PC17
LinkDB
All DBs
Position
Sna27:complement(30193581..30197090)
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AA seq
389 aa
AA seq
DB search
MATPVNIQNPSKTWELSLYELHRSPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMT
TKECLHRFCSDCIVTALRSGNKECPTCRKKLVSRRSLRRDSNFDALISKIYPSRDEYEAH
QDRVLERLNRLHNKQALSSSIEEGLRMQALHRAQRVRKPAQESDNTTFSGGEDNGDARSH
LSHDSAPSHPPIPPSHTPSEAGPSRNPKRPRVSDESGPEVDGGSPTAPLRHHKEGPGSEI
ELVFRPHPLLVNTQDYSQTRYVKTTANATVDHLSKYLALRIALEERQRDSQSDAAMEKGK
EGVEAGAKGEKSAGGGASLKNVSEKQYTIYITTSGGQFSTLNGSLTLELVNEKYWKVRKP
LELYYAPTKDQPLQPSQPPQQKSPQPKEG
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggcgactccagtcaacatccaaaaccccagtaagacgtgggagctgagcttgtatgaa
ctgcacaggagcccacaggaggcgatcatggacggcacagagatagcggtgtccccccgg
agcctccacagtgagctgatgtgccccatctgtctggacatgttgaagaacacaatgacc
accaaggagtgcctgcaccgcttctgctctgactgcattgtcactgcactccgatcaggg
aacaaggaatgccccacgtgccgaaagaagcttgtgtctagacgctcgctccgccgcgac
tccaactttgacgccctcatctccaagatctaccccagccgtgacgagtacgaggcccac
caggaccgggtgctggagagactcaaccggctgcacaacaagcaggccctcagctccagc
attgaggaggggctgcgcatgcaggctctgcacagagcccagcgagtgcgcaaaccggcg
caggagagcgacaacaccaccttcagcggcggcgaggacaacggggatgcgcggtcacac
ctctcccacgactctgcgccctcccacccgccaatccccccgagccacacaccctctgag
gccgggcccagccggaaccctaagcggcccagggtgtcagatgagtcaggcccggaggtg
gatgggggcagccccacggccccgctccggcaccacaaagagggccctggctcagagata
gagctggtgttccgcccgcaccccctgctggtcaacacacaggactacagccagaccaga
tatgtgaagaccacagccaatgccacggtggaccacctgtctaagtacctggctctgcgt
attgctctggaggagaggcaaagagacagccaatcagatgcagcgatggagaaggggaaa
gagggagtggaggcgggggctaaaggagagaaatcagcaggaggaggggccagcctgaag
aacgtcagtgagaagcaatacaccatctacatcaccacatcagggggccagttctctact
ctgaatggctccctgactttagagctggtgaatgagaagtactggaaggtcagaaagcct
ctggagctttactatgcccccaccaaggaccaaccgcttcaaccatcacagccaccgcag
cagaagtccccacagcccaaagaagggtga
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integrated database retrieval system
