Salvelinus namaycush (lake trout): 120022275
Help
Entry
120022275 CDS
T07522
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
snh03015
mRNA surveillance pathway
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120022275 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
120022275 (ddx39b)
03015 mRNA surveillance pathway
120022275 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120022275 (ddx39b)
03041 Spliceosome [BR:
snh03041
]
120022275 (ddx39b)
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120022275 (ddx39b)
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120022275 (ddx39b)
Spliceosome [BR:
snh03041
]
Complex C
Other components
EJC/TREX
120022275 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120022275 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
120022275
NCBI-ProteinID:
XP_038822105
UniProt:
A0A8U0PBZ6
LinkDB
All DBs
Position
27:3476525..3495187
Genome browser
AA seq
428 aa
AA seq
DB search
MTEQDVENELLDYEEEDVVGDLSGGDILSIKKERVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPTIKVAVFFGGLSIKKDEEVLKKECPHVVVGTPGRILALI
RNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRLTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
VALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDARTLNDVQDRFEVNISELPDEIDI
SSYIEPTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcaggatgtggagaatgagctcttggactatgaggaggaggatgtggtggga
gatctatcaggaggggacattctgtccattaaaaaggagcgtgtgaagggctcctatgtg
tccatccattcgtctgggtttagagacttcctgttgaagcctgagctgctgagggcgata
gtggactgtggctttgagcatccctctgaggttcaacatgagtgcatccctcaggccatc
ctgggtatggatgtgctgtgccaggctaagtctggtatgggcaagacggccgtgtttgtc
ctggccacactacagcagctggagcctgtcactggacaagtgtccgtgctggtgatgtgt
cacacccgagagctggcgtttcagatcagcaaggagtatgagagattctccaagtacatg
ccgactatcaaggtggcagtgttctttggtggcctgtctataaagaaggacgaggaggtg
ttgaagaaggagtgtccccatgtggtggtggggacgccggggcgaatcctggccctgatc
cgcaacaagaccctcaacctgcgacacatcaaacacttcatcctggacgagtgtgacaaa
atgttggaacaacttgacatgcgccgagacgtccaggagatattccgtctgaccccccat
gagaaacaggtcatgatgttcagcgccaccctgagcaaagagattcgccccgtctgccga
aagttcatgcaagatccgatggaaatctttgttgatgatgagaccaagctgactctccac
gggctgcagcagtactacgtcaaactgaaggacaacgagaagaacaggaagctctttgat
ctcctcgacgtgctggaattcaaccaggtggtgatctttgtgaagtccgtgcagcgctgt
gtggctctggcccagctgttggttgagcagaacttcccggctattgccatccaccgcggg
atgcctcaggaggaacgtctctctcgttaccaacaatttaaagacttccagagacgtatc
ctggtggccaccaacctgtttggcagagggatggacatcgagagggtcaacatcgccttc
aactacgacatgccagaagactctgacacgtacctgcacagggttgccagggcgggcagg
tttggcaccaaaggcctggccatcacatttgtgtctgatgagacggatgcccgtactctt
aacgacgtccaggaccggttcgaggtgaacatcagcgagctgcccgacgagatcgacatc
tcatcttacattgaaccaacccggtaa
DBGET
integrated database retrieval system
