Salvelinus namaycush (lake trout): 120022338
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Entry
120022338 CDS
T07522
Name
(RefSeq) LOW QUALITY PROTEIN: POU domain, class 2, transcription factor 2-like
KO
K09364
POU domain transcription factor, class 2
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120022338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120022338
03021 Transcription machinery [BR:
snh03021
]
120022338
Transcription factors [BR:
snh03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
120022338
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
120022338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pou
Homeodomain
HTH_31
Motif
Other DBs
NCBI-GeneID:
120022338
NCBI-ProteinID:
XP_038822160
UniProt:
A0A8U0PCC0
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Position
Sna27:30824325..30839794
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AA seq
530 aa
AA seq
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MERNQRDIRMSKPAEDEKPGADFPGESTDSERNSPDANDQSKGEAVPEMISTHVPPPSQQ
QTPHPHTQLMLAGSQLAGDIQQLLQLQQLVLMPGHHLQSPQFLLPQAQGQQGQQGLLSTP
NLIPLPQHQQSQGSLLTTPPRLGLQAQVXYYXKPPQICVSPMTSVTSGPHGEEPSDLEEL
EQFARTFKQRRIKLGFTQGDVGMAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEK
WLNDAETMAIDSMLPSPNSLSSPMMGFEGMPGRRRKKRTSIETNVRVALERNFILNQKPN
SEEILLMGQQLNMEKEVIRVWFCNRRQKEKRINPCSATPPLPSQSPSMMHKPPCYSPHMV
SSQGLHQAATSLSTTATSSTPSSRTPPPHSTASPAPPTLSTHSLNAGNTMMGVSTGMNQA
LISSNHLATMQALAASGGQLPISSLEAGGQMILGGAGVRPSLFLNRHTLLPMASHQAGVG
LVGGPRGASPPPGASGMDVDSCSASPCSSPTSFGSFSEASPPPLGGAMAE
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggagaggaaccagagagatatcaggatgtcaaaaccagcagaggatgagaagcctggg
gcagactttccaggggagagcacagactccgagaggaacagtcctgatgccaatgatcag
agtaaaggtgaggcagtacctgagatgatctccacccatgtgccgcctccttcccagcag
cagacgcctcaccctcacacacaactcatgttggcagggagtcagctggcaggggatatc
cagcagctgttgcagttgcagcagttagtcctgatgcccggccaccacctgcagtctcct
cagttcctcctgcctcaggcccagggacaacaggggcagcagggtttgctctcgacacct
aatttaattccgctacctcagcatcagcaaagccaggggagtcttctaactactccaccc
aggctgggactgcaagcacaggtatagtattattgaaaaccacctcaaatatgtgtgtcc
cccatgacctcggtgacctctggccctcacggcgaggagcccagtgacctggaggagctg
gagcagttcgcccgcaccttcaaacagagacgcatcaaactgggcttcacacagggtgac
gtaggcatggcgatggggaaactgtatgggaatgacttcagccagaccaccatctctcgc
ttcgaggccctaaacctgagctttaagaacatgtgcaagctcaagcctctgcttgagaag
tggctaaacgacgcggagaccatggcgatagacagcatgcttcccagcccaaactctctc
tcctcccccatgatgggatttgagggcatgccggggcgccgcaggaagaaacgcaccagc
attgagaccaacgtccgcgtggccttagagcgcaacttcatcttgaaccagaagcctaac
tcagaggagattctcctgatgggccagcagctcaacatggagaaggaggtgattcgggtc
tggttctgcaaccggcgccagaaagagaagcgcatcaacccttgcagtgccacccctccc
ctgcccagccagtccccctccatgatgcacaaacccccctgctacagcccgcacatggtg
tccagtcaggggctgcaccaggctgctaccagcctcagcacaacagccaccagctccacc
ccctcctctaggactccgcctccacacagcacagccagccccgctcctcccaccctcagt
acccacagcctgaacgctgggaacacaatgatgggagtaagcacagggatgaaccaggct
ctcatcagcagcaatcacctggccacaatgcaagctctggctgccagtggtgggcagctg
cccatttccagtcttgaggccggaggtcagatgatcctgggcggggctggggttcgcccc
tccctattcctcaaccgccacaccctcctgcctatggcgtcccaccaagccggtgtgggt
ttggtcggcggtcccaggggagcctctccaccccccggcgccagcggcatggacgtcgac
tcctgctccgcctctccctgctccagccccacctccttcggctcgttcagcgaagcctca
ccgccgccgcttggcggggccatggccgagtga
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