Salvelinus namaycush (lake trout): 120022424
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Entry
120022424 CDS
T07522
Symbol
vps52
Name
(RefSeq) vacuolar protein sorting-associated protein 52 homolog
KO
K20298
vacuolar protein sorting-associated protein 52
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120022424 (vps52)
Membrane trafficking [BR:
snh04131
]
Protein recycling
Others
EARP complex
120022424 (vps52)
Endosome - Golgi transport
Tethering complex
GARP complex
120022424 (vps52)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps52_C
Vps52_CC
Sec3_CC
DUF5740
CoV_NSP7
Cep57_MT_bd
MscS_porin
DUF3440
DUF1664
Motif
Other DBs
NCBI-GeneID:
120022424
NCBI-ProteinID:
XP_038822238
UniProt:
A0A8U0PBS5
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All DBs
Position
Sna27:complement(30172470..30183896)
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AA seq
724 aa
AA seq
DB search
MADRAVTAAMSDVNTTVNSTANSMAYLQDEMKPDTDAMAPLNLGDLDLTTDEFILDEVDI
HIQANLEDDLVKEALKTGVDLRQYSKQVEDELQRIEQASIKDYIKESQNIASLHNQITAC
DSILERMEGMLSGFQSDLSSISSEIQTLQQQSVSMNMRLKNRQAVRSHLSQLVDELVVPG
AMIQVILESPVTEQEFLEQLHELNNKINFAKELSFRETLACSDIQDIVDRLKIKAVTKIR
EFILQKIYSFRKPMTNYQIPQNTLLKYRFFYQFLLANERTVAKEIRDEYVDTMSKIYYSY
FKSYSGRLLKVQYEEVADKDDLMGVEDTAKKGFFSKPSLKSRNTIFTLGQRGTVLSPAEL
EGPILIPHTAQRGDCRYPYETLFRSQHYALLDNGCREFLFLSDFFMVAGNSALDLFNSVM
GKTLSLFLKSMSTYVSDCYDSIAVFLCIHIILRFRAITNKRTIPALDKYWDAVLELLWPR
FELILEMNIQSIRNTDPQKLGVLDTRPHYITRRYAEFSSAIVSINQTFTSERTHTLLGQL
QVEVENFVLKMAAEFPSRRDQLIFLINNYDMMLSVLMERAADDSKEVEGFQQLLQARNQE
FIEEILSSPFGGMIAFVKESEALTEKGQLDRLKNDEARITQLVRGFSSTWKQSVEALSQD
VMRSFTNFKNGTGIIQGALTQLIQYYHGFHKVLSQPTFRSLAVRSELINLHHLMVEVKKH
KPNF
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggcggatagagcagtgactgctgctatgtccgatgtaaacacaactgtcaactcaacg
gcgaattccatggcatatttacaagatgagatgaagcctgacacagatgccatggcccct
ctcaacctgggtgacttggacttgaccacagatgagttcatcttggatgaggtggacatt
cacatacaggcaaatcttgaagatgacttggtgaaggaggcactgaaaacgggagttgac
ctccggcaatactctaaacaagtggaggatgaacttcaacggattgaacaagcctccatc
aaagactatatcaaggagagccagaatattgcctctctgcacaaccagatcacagcctgt
gactccatactagagcgaatggagggcatgctgagcggcttccagagtgacctctcgtcc
atcagcagtgagatccagactctgcagcagcagtcggtcagcatgaacatgcggctgaag
aacaggcaggccgtacgcagccacctcagccaactggtggatgagctggtggtgcccgga
gctatgatccaggtaatcttggagagcccggtgacagagcaggagttccttgagcagctc
catgagctcaacaacaagatcaactttgccaaagagctcagcttcagggagactttggcc
tgctctgacatccaggacattgtggaccgcctcaaaatcaaggctgtcacaaagatccga
gaatttatcctgcagaagatttattccttcagaaagcccatgaccaactatcaaatccct
cagaacaccctcctcaagtacaggtttttttatcaattcctcttggcaaacgaaaggaca
gtggccaaggagatcagggatgagtacgtggacaccatgagtaagatctactacagttac
ttcaagtcgtacagcggcaggctcctcaaagtacagtatgaagaggtggcagacaaagat
gacttgatgggagtggaagacacggccaagaaaggtttcttctccaagccctccctgaag
agcaggaacaccatcttcaccctgggccagcgggggaccgtgctgagccctgccgagctg
gaggggcccatcctcatcccccacactgcccagagaggggactgcaggtatccctatgag
acgctgttccgcagtcagcactacgccctcttggacaatggctgtcgagagttcctcttc
ctgtctgacttcttcatggtggctggaaattctgcgctggacctcttcaacagcgtcatg
ggaaagacgctcagcttgttcctgaagagcatgtccacctatgtgtcggactgctacgac
agcatcgccgtgttcctgtgtatccacatcatcctgcgtttcagagccatcacaaacaag
aggaccatcccagccctggacaagtactgggatgcggtgctggagctgctgtggcccagg
tttgagcttatcctggagatgaacattcagagcattcgcaacacggatcctcaaaaactg
ggcgtgctggacaccagaccacactatatcacacgcagatatgcagagttctcttctgcc
atagtcagcattaaccagacattcaccagcgagcgaacccacaccctccttggccaactg
caggttgaagtggagaactttgtcctgaagatggctgcagagttcccttcacgcagggac
cagctcatcttcctcatcaacaactatgacatgatgctcagtgtactcatggagagggca
gctgatgacagtaaagaggttgagggcttccaacagctcctccaggccaggaatcaggag
tttattgaggagattctgtcctctccctttggtggcatgatagcatttgtgaaggagagc
gaggcgctgacggagaaagggcagctggatagactaaagaatgacgaagcccgaatcacc
cagctggtcaggggtttctccagcacatggaaacagtctgtggaggctctgagtcaggac
gtcatgaggtccttcaccaacttcaagaacggcactggcatcattcagggggcgctcact
cagttgatccagtactaccatggcttccacaaggtactgtcccagcccacctttcgcagc
ctggccgtgcgctctgagctcatcaacctgcaccacctcatggtcgaagtcaagaaacac
aagcccaacttctaa
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