Salvelinus namaycush (lake trout): 120022442
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Entry
120022442 CDS
T07522
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120022442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120022442
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120022442
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120022442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
120022442
NCBI-ProteinID:
XP_038822269
UniProt:
A0A8U0TNV9
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Position
27:complement(31852921..31869083)
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AA seq
929 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRFIEKHRYHI
RMLETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEELPTSPSV
SPHPSLVSLAGSLVATSPPGQSLLDDDLFHQISSGTPTSTTSSSPIPTTYTTENSDDDKK
RGRSTDSEISQSPVKNGNPSSSLSSSSSSSSSSSSASGASSGASSSLASMVNIAGGGQAI
AGGNNNSLLGNMGGLLSNSGSYSDATQQQLQQHHHQTHQARNSVLSSNAPSSPSNNILLP
SPSSPAISSTALTPNTQPQAPSRPSPGSTLGLGLGLGLGKGGMSGSPAVSQMSGLGLSGM
PASLNTMAGLLAGSTSAPYATAAAGSGTIGSPLAGKISSLSTSSTNSSSMGPVSGHSVSD
RSTGLLGSVPGAVGVSGGILGLGSGQSTVQGPPLVSPSPIGGGLATGSSLGAIGSIEGIS
GSGAPSNSVGIGGGSAAIGRPPSGQKQNGSTSYSAVVADSTPDSALNSASQLQSSQPLSL
TSTTNQLKDSGPSLLGSMTLPTSTPSPSYIESKPLGSSMLNGPLSYTQASESMKPQEPLS
TVKSIAEQVTLGSAMDGELPPLHLTTDIFPSTTGPPSAPQQPSLSEVSIPPSLGVCPLGP
VPLSKDQLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPPHSDSVEFYQ
RLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY
IYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagttacggaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaatgctaaccag
aaggagaagtatgaagccgacctcaagaaagagattaaaaaactgcagcgtcttcgagac
cagatcaagacgtgggtggcctccaacgagatcaaagacaaaaggcagctagtggagaat
cgcaaactcattgagacgcaaatggagcgtttcaagatcgtggaacgagagaccaagaca
aaggcttactcgaaagaggggctgggcctggcacagaaggtggacccggcccaaagggag
aaggaggaggtcggcaattggctaacgaatacgatagacactctgaacatgcaggtggat
cagtttgagagcgaagtggagtccctctcagtccagactcgaaagaagaaaggagacaaa
gagaaacaggaccgcatcgaagagctgaagcgcttcatcgagaagcaccggtaccacatc
aggatgctggagaccatcctgcgcatgctggacaacgacaccttgccggtggactccatc
cgcaagatcaaggatgacgtggagtactacatggactcgtcgcaggaccccgacttcgag
gagaacgagttcctctacgacgacctggatctcgaggagctccctacctctccctctgtc
tccccccatccatctcttgtctctctagccgggtcgctggtggccacgtccccgccgggc
caatcgctcctggacgacgatctcttccatcagatctccagcggcacgcctacctccacc
acttcctcctcgcccatccccaccacgtacactacggagaattctgacgatgacaagaaa
aggggacgttcgacagacagtgaaatcagtcagtcgcctgtcaagaacggcaacccctct
tcgtcgttgtcttcctcgtcctcgtcgtcctcctcttcatcatctgcctctggcgcctcc
tcgggagcctcttcctcgctggcctctatggtgaacatcgccggaggcggccaggccatc
gctgggggcaacaacaacagccttctgggcaacatggggggtctcctctccaactctggc
agctacagcgacgctacccagcagcaactgcagcagcatcaccaccaaacgcatcaggcc
agaaactcagtcctctcctccaacgccccctccagcccgtcgaacaacatcctcctcccc
agcccctcctcgcccgccatctctagcacagccctcacacccaacacccagccgcaggct
ccgtcaaggccctctccgggctccaccttggggctcgggttgggcttgggccttggtaaa
ggcgggatgagtgggtcaccggccgtcagccagatgtcaggccttggcctgtcagggatg
ccggcgtccttaaacaccatggccggtctcctggcgggctccacttcggccccctacgcc
acggcagcagcaggctccgggaccataggaagcccccttgcagggaaaatcagcagcctg
agcactagcagcactaactccagctcaatgggaccggtgagcggacacagcgtcagcgac
agatccactggcctgttgggctctgtgcccggtgcagttggtgtcagtggtgggatactg
ggccttggctcgggacagtcgacagtccagggccctccactggtgtcccccagtcccata
ggaggaggcctggccactggaagcagcctgggagctataggaagcattgaagggatctct
ggatcaggagcgccaagtaacagcgtgggcatcggaggaggaagcgcggcgatcggaagg
ccgcccagtggacagaagcagaatggtagcactagttacagtgctgtagtagcagacagc
acaccagattctgccctcaacagtgccagccaattacaaagcagccaacccttgtctttg
acctccaccaccaatcagcttaaagacagtggccccagccttttagggtccatgaccctt
cccaccagcactccctcgccatcctacattgagagtaaacctttaggcagcagtatgctc
aacgggccgctctcctacactcaggcctctgaaagcatgaagccccaggagcctctgagc
actgtgaagtccattgccgaacaagtgacactgggctcagcaatggatggagagttgccc
cctctgcacctcaccacagacattttccccagcactacagggcctccctcggccccccag
cagccctcgctctcagaggtcagcatccccccatcgctgggtgtgtgcccgctagggccc
gtacccctgtccaaagaccagctgtaccagcaggccatgcaggagtcggcctggacgcac
atgcctcacccctccgactcagagcggatcaggcagtacctgatgaggaacccgtgtccc
accctgcctttccaccaccaggtgccacccccccactccgactctgtagagttctaccag
agactgtccacagagacactgttcttcatcttctactacctagagggcactaaggcccag
tatctggcagccaaggccttgaagaagcagtcgtggcggttccacaccaagtacatgatg
tggttccagaggcacgaagagcccaagaccatcacagatgagtttgagcaggggacgtat
atttactttgactacgagaagtggggacaacggaagaaggaaggattcacgtttgagtac
aggtaccttgaagaccgagacctccagtga
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