Salvelinus namaycush (lake trout): 120022455
Help
Entry
120022455 CDS
T07522
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120022455
Transcription factors [BR:
snh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120022455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
120022455
NCBI-ProteinID:
XP_038822293
UniProt:
A0A8U0PD05
LinkDB
All DBs
Position
Sna27:30911471..30944037
Genome browser
AA seq
2558 aa
AA seq
DB search
MKPIKKQGRRSPPSTRAKGGKRRGTGDSGEKRDRSPKIQTSPQTSSHSESSQEESVTLTT
MATPEREGHREGPRLPETAAAAAGSLPVKSEDSRPGSVKSLSAHSTDSSSSATSAANSPN
PSSNRKTATFKARVPKKKYTSEHCAAAAAAAANHRNPGNTGAPPLNRNSAHCDSNAGGQL
SSLSSGPGSAASEGGSLTDINSQTRRPVEDYITTIAPPQDRDNTPGPPPTGDRDRRGPER
GREISPSPVRCSSTDTASEHDLDVSEPHRSNSHHTNPTTEAHTLALVQRSTQHTPTPQSL
SDALADALAKGLKNQRVLARQARRRTGKGEEENGGEGRESMDSVFRAGVVRRVSGEHGSL
EVQLNGEKELYRYPFREGAQGPVDIIMDAPPPGSQAVPIGTAVCVPFGGNEDGGTTEAQR
QWYREGLVTQVDSHPAVSYPYRVLLEDRVPPGDEEGDGRVGTPTAVWVSRQSLRLLVPPW
DLDLGPCGGGREESDAAAKRGREREREKEDRDEIEVEQELCRLSRGMGLSATVAGSVLGR
LSYPGTAPASSSSSTVSSPVTPASVLSLVAGRDWEREKDLVERERELQRKQERDNRERAK
QHHHFMPLTPEEDIEVSHFSMVPMGAAGGAAKALAVSQHRHILSKPPPGYLSPHLSVVRS
LGGTPLVGPHLALNPHPPPSPTVLLGLESGALAAGAAVIATPQLPPLSSSSSRGSLDKPP
SSNSISHGASGGGGGSCSTSSSRSRTPLTAAQQKYKKGDVVCTPTGIRKKFNGKQWRRLC
SREGCSKESQRRGYCSRHLSMRTKEMEASGGGRDRGGASSTGTLTPSDLRLGCGRTSSEF
DWDNTSRDSSEASSRGGDSRPRLVLPSLLPQDLSRFDFDECEAATMLVSLGSSRSGTPSF
SPISNQSPFSPTPSPSPSPLFVFRPATFSPITAPPSLTTRRHRHLSGTKMVTPGSERERH
LSGIVPTFQTNLTFTVPMSPSKRKLDALPPPLPLSAQDYAKPDQQLGETIGLSPAAFRVL
SPQSQPTTPSSLSFPRPRSATSRPPSSAASTPPPMLVSPTPPSPLPQDPSPRRVVPLRDS
PVIVRNPDVPLAKFTDGPLVRRGGGGRSSREHSQPLHLATGLQAPVPINGAATNGAVLLR
NPASTLVLVTSSQSLTPAVAGHPAHSSPTLSGGSTSISSTGSALSSSGSGGREWERKPGG
HQDAIGGALPQPVACHPSPTALLPLILPAESPHPAPRKDIIIGRPGTVWTNVEPRSVPVF
PWHSLVPFLEPSQSSAAAQPADGQQLVNQSKEPRCGVALVSDGWVGPPDAEQGSPSRPPP
SSKDNDPPAGRAERGGADSETESDADDPFFPGVANDPAPSTSPIKRRTQSLSALPKDGDR
KREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLA
FQVKEAHFKAHPDWKWCNKDRRKSISEGRETPGAKEARERSMSESTEPESVSQGMEVKGA
AGPDWPGGSERHAGAYSGQLPRPRAFSQSAVHSLEKRERARDVEKLCREGAGSFRSRPPT
LSLTQCGASEDVTSDEERMVICEEEGDDDVMEDSCPEGSIDLKCKERVTDSDEDEPDGQR
AFQPVVRSSLPYATSTSHADSHSDSTKGNTGGSTGESSERKRKRGMEGGEEGSGESKRGG
GGGQVPSNSIPGSAPFTSTPALGYGLTQVLGAVRMAPTMVTNVVCPIASTPIPITSKPME
GPIALSALPGEKKATLLIGGPGAIGGPITAGGGYLSSSSPNPVSVGTGGLQVTSLVLGGA
FPNQSIQLIAPPQPLLSPTHSTLPLPLLQPQFLPAASLTSAGGAKPGLTQVQYILPILSC
VSANPKSPSPQLTQQPTGVLTLPSTPPTHVSQANGIHSGAGVGIRYAAVGGVSPGARVQA
QSPVLQSKMLVPMATVRTGSTPPQPISHVAPPLPVQNGALPGNKIIQIAPMPMVQTNVHP
AGAVHPGSPFPVSMATATVMTPGIKPPQTVLLTSPPTRITYVQSSTGVGSTAMVQAPLSP
GPAYLPSSLTTLGFTAITPAGQALMQPLVAGQPPLLAPALSPGAPGTGRQLLTAIYPAPS
ITLASGGVAMTSVLPNLAQEVSGQSSSSAVGVQGSKDVTRSHEEGMPHLTAELEQKSQVE
GQAQRKNKAQIKKESIKKENTTEDVEAYSKPGANSMAKSSSNIPTGSEEDSGRASHMKEE
NTDDDRDYARGNGEREREIKKESGTPEPEESREAEDWPHEGHNKGASGNGGHSKEAGPRE
PLHPPTGLDPPPPPQTDRDAPPSAKKTKFRPPPLKKPSDAVEKVLSGSYFEERFAELPEF
RPEEVLPSPTLQSLATSPRAILGSYRKKRRNSTDLDSSAEDPSSPRRKAAARSRLSSCSS
EPNTPKSEAKCEGDIFTFDRAGAESEDVLGEMDKVPYSSLRRTLDQRRALVMQLFHEHGF
FPSAQATAAFQARYSDTFPTKLCLQLKIREVRQKIMQTATPGTPGISEPGGSTTGVMGST
DSASAAIGSSNTNTRDGTGTEPGERGRSPEEPRNGGKL
NT seq
7677 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgattaaaaagcaaggaaggcgctcgcccccgtcgacccgagccaaagggggg
aagagacgggggacaggggacagtggagagaaaagagaccgatcccccaaaattcagacc
tcaccccaaacctcatctcactcagagtcttctcaggaggagtcggtgacactcacaacg
atggccacgccagagagggagggtcacagagaggggccccggctcccagagacagcggcc
gcagcagcagggtccctccctgtgaagtcggaggactcccgcccggggagcgtcaagtcg
ctgagcgcccacagcacagacagcagcagcagtgccaccagcgctgccaacagccccaac
ccctcgtccaaccgcaagacggccaccttcaaggcccgcgtccccaagaagaagtacacc
tctgagcactgtgctgccgccgccgctgccgccgccaaccacagaaaccccggcaacacc
ggcgcgcctccactgaacagaaatagtgctcactgtgacagtaacgccggaggtcagttg
tcgagcttatcttcggggcccgggtcggcggcgagtgagggcggttcgctcactgacatc
aacagtcagaccaggagaccagtggaggactacattaccactatagctccaccacaggac
agggataacacacctggaccccctcccacaggggacagagacaggagaggcccagagcga
ggcagagaaatctcccccagccctgtccgctgctcctctacagacacggccagcgaacac
gacctggacgtgagcgagccacaccgctccaactctcaccacaccaaccccaccaccgaa
gcacacaccctggccctggtgcaacgtagcacccagcacactccgaccccacagagcctg
tcggacgcgctcgccgacgccctggccaaaggtctaaagaaccagcgggtgctagccagg
caggctaggaggaggactggaaagggggaagaggagaacggaggtgaggggagggagagc
atggactcagtgttcagagcgggagtggtgcggcgggtgagcggcgagcacggcagcctg
gaggtgcagctgaacggtgagaaggagctttaccgctacccgttccgtgagggcgcccag
ggacccgtggacattatcatggacgccccgccgcccggctcccaagccgtccccatcggc
accgctgtgtgcgtgcccttcggaggtaacgaggacggcggcaccacagaggcccagcgc
cagtggtaccgagagggcctggtcacccaggtggactcccacccggctgtgtcctacccc
tatagagtgttgttagaggacagagtgcccccaggggatgaggagggggatggcagggtg
ggcactccgaccgctgtgtgggtgtcccgtcagagcctccgcctgctggtgcccccctgg
gacctggacctgggaccctgcggaggggggcgagaggaaagcgatgctgccgccaagaga
gggcgagagagggagagagagaaagaggacagggacgagatagaggtggagcaggagctg
tgtcgcctcagccgtgggatggggctcagcgcgactgtggctgggtccgtgttggggagg
ctttcataccctggaacggcccccgcctcctcgtcttcctccactgtcagctcccccgtc
acccccgcctcggtgctgagtctggtggccggaagagactgggagcgagagaaggacctg
gtggagagagagcgggagctccagaggaaacaagagagagataaccgagagagggccaag
cagcaccaccacttcatgcccctgacccccgaggaggacatagaagtgtcccacttcagc
atggtgcccatgggggcggcggggggggcggccaaggccctggcggtgtcccagcacagg
cacatactctccaagccgcccccgggctacctcagcccccacctgtccgtggtccggagc
ctcggcggcaccccgctggtgggcccccacctggccctcaacccccacccccctccctcc
cccacggtgctactggggctggagtcgggagcgctggcagcgggggcggccgtcatcgcc
acccctcagctccctcctctgtcctcctcgtcctcccgtggctccctggataagccaccc
tcttcaaactccatctcccacggtgcatctggagggggtggaggctcgtgctcgacgtcc
tcgtcgcgctcccgcaccccgctcacggcggcccagcagaagtacaagaagggcgacgtg
gtgtgtacccccacgggcatccgcaagaagttcaacggcaagcagtggaggaggctgtgc
tccagagagggctgctctaaggagtcccagagaagaggctactgctcgcgtcatctctcc
atgagaactaaagagatggaggccagcggagggggcagagaccgtggtggggccagcagt
acgggcaccctaaccccgtcagacctgaggctgggctgcggccggaccagttcagagttc
gactgggacaacacgtcgcgagacagcagcgaagcgagcagtaggggaggggattcacgc
ccccgcctggtcctgccctcgctcctgccccaggacttatcacgcttcgactttgatgag
tgcgaggcggccacaatgctggtatctctgggcagctcccgctcgggcacgccttccttc
tctcccatctccaaccagtcgcccttctcgcccacaccgtcgccctcgccttccccgctt
ttcgtcttccgcccggccaccttcagccccatcacggcgccgccttcgctcaccactcgc
cgccatcgccacctgagcggcactaagatggtcacgccgggctcggagcgcgagcgccac
ctgtcgggcatcgtacccaccttccagaccaacctcaccttcactgtgcccatgagcccc
agcaagcggaaactggatgcccttcctccgcccctgcccctctctgcccaggattacgcc
aagcccgaccagcagttaggggagactataggcctcagcccagccgccttcagggtgctc
tctcctcagagccagcccaccactccctcctccctctccttcccccggccccggagcgcc
accagccgccccccgtcctccgccgcctccacccccccgccaatgctggtgtcccccacc
cctccctcccccttgccccaggaccccagtccccgccgcgtcgtgcccctgcgagactcc
cccgtcatcgtgcggaaccccgacgtccccctggccaagttcacagatggacccctggtg
aggaggggaggaggaggccgctcctccagagagcacagccagcccctgcaccttgccacc
ggcctccaagcacccgtgcccatcaacggcgccgccaccaatggcgcagtcctcctgcga
aaccccgcctccaccctggtccttgtaacctcctcccagtccctgaccccagccgtcgcc
ggacaccctgcccactccagccccaccctcagtggtggctccacctccatctcctctact
ggctccgccctctccagctctggatcaggaggtagagagtgggagaggaagcccggcggg
caccaggacgccattggaggggcattgccccagccggtagcctgccacccctctccaacc
gccctgctgcccctcatcctaccagccgagtcccctcaccctgcaccccgcaaggacatc
atcattggacggcccgggacagtatggaccaatgtggagccccgttcagtgccagtgttt
ccttggcattcattggtccctttcctggagcccagccaatcgagtgcggctgcccagccc
gctgatggccaacagcttgtcaatcagagcaaagagccccgttgtggggtggccctagtg
agtgacggatgggtgggtccaccagacgcagagcaagggtctccatcccgcccaccaccc
tcctccaaagacaacgaccccccagctggaagagcagaaagaggtggagccgacagcgag
acggagagcgatgcagacgacccgttttttccgggtgtagccaatgatcctgccccgtct
acgagccctattaagaggcgcactcagtccctcagcgcccttcccaaagatggagacaga
aagagggaaaaggaccacattcggcggccgatgaacgcgttcatgattttcagcaagcgt
caccgggcgctggttcaccagaggcaccccaaccaggacaaccgcacggtcagcaagatc
ctgggcgagtggtggtacgccctggggcccaaagagaagcagaagtaccacgacctcgcc
ttccaggtgaaagaggctcacttcaaggcccacccagactggaagtggtgcaacaaggac
aggaggaagtctatctctgagggccgagagaccccaggggccaaagaggcacgcgagagg
agcatgtctgagagcacagagcctgagtcagtctctcagggaatggaggtgaagggtgcg
gcaggcccggactggcctgggggctctgagcgtcatgcgggggcctacagtggtcagctc
cctcgcccccgggccttctcccagagtgcagtacacagcctggagaagagggagcgggcc
agagatgtggagaagttgtgtcgagaaggggcaggctcattccgcagccgcccccctact
ctctccctgacacagtgtggggccagcgaggacgtgaccagcgacgaggagcgcatggtc
atctgtgaggaagagggggacgatgatgtcatggaggactcgtgccctgagggatccata
gacctcaagtgtaaagagagagtgactgacagtgacgaggatgagccggatggacagcga
gccttccagccagtggtccgctcctctctcccctacgccaccagcacctcccacgccgac
tctcactccgactctaccaaggggaacacaggggggagcaccggagagagctctgagagg
aagagaaaacgagggatggagggaggagaagagggaagtggagaatccaaaagaggaggt
ggaggggggcaggttccctctaattccatccctggatcggcgcccttcacctcgaccccc
gctctgggttatggactcacccaggtgctcggtgcagtccggatggcccccaccatggtg
accaacgtggtatgccccatcgccagcacgcccatccctatcaccagcaagccaatggaa
ggccccatcgccctcagtgccctccctggggagaagaaagccacgcttctgattggcgga
ccgggagcaataggcgggcctatcacagcagggggtgggtacttgtcctcgtcctctccc
aatcccgtgagtgtggggacgggggggctgcaggtcaccagtctagtgctgggaggagct
ttccccaaccagtctatacagctcatagccccgcctcagcctctcttaagccccacccac
agcaccctgccacttcccctgctgcagccccagttccttcctgccgcctctctcacctcc
gctggcggtgcaaagcctggcctcacccaggtgcagtacatcctgcccatcctgtcttgt
gtcagtgccaaccccaagagcccctccccccagctaacccagcagccaaccggcgtcctc
acgctaccctccactccgcccacccatgtctcccaggccaatggaatacattcgggggca
ggagtgggaataagatatgccgcagtgggaggggtcagtcctggagcaagagtccaagcc
cagtctccagtcttgcagagcaagatgttggttcccatggcaacagtgagaaccggctct
actcctcctcagccaatctcccacgtggcccctccccttcctgtgcaaaatggtgctcta
ccaggaaacaagatcatccagattgcccccatgccgatggtccagacaaatgtccaccct
gctggagcagtgcatcctgggagtcccttccctgtatccatggcaacagccactgtgatg
actccgggcatcaaaccccctcagaccgtgttgctgacctcgcctccaacaaggatcact
tatgtccaatccagcactggagtgggctccacggcaatggtccaggcccctctttctcca
ggacccgcctacctgccgtcgtccctgacgactctgggcttcaccgccattactccggcc
ggccaagccctgatgcagcctctcgtagcgggccaaccgccattgctagccccggccctt
tcccctggagccccggggaccggacgtcaactcctcaccgccatctacccggcccctagc
atcaccctagcgtcaggtggggtcgccatgacctccgttctccccaatttggctcaagaa
gtgtccggccaatcatcatcctcggctgtcggcgtccagggttcaaaggacgttacccgg
tcacatgaagagggaatgccacacctgactgcagagttggagcaaaagtcacaggtggag
ggccaggcccaacggaagaacaaggctcagataaagaaagagagcataaagaaagagaat
acgacggaggatgtcgaggcatatagcaaaccaggtgctaactcaatggctaagtccagc
agcaatataccaacagggagtgaagaagacagtggtcgagccagccacatgaaagaagag
aatacagacgatgaccgagattatgcccgagggaatggagaaagggagagggagataaag
aaggagagtgggacgcctgaaccagaggagtccagggaggcagaggattggccccatgag
ggccacaacaaaggggccagtggcaacgggggccacagcaaagaggcaggaccgagggaa
cctctccaccctcccacaggactggaccctccgcctcccccacagactgacagggacgcg
cccccctcagccaagaagaccaaattccgccccccgccactcaaaaagccctcagacgcc
gttgaaaaggtcctgtcggggtcctatttcgaggagcgctttgccgagctgccagagttc
aggccagaagaggtgctgccctctcccaccctccagagtctggccacctccccccgagcc
atactgggcagctatcggaagaagaggaggaactccacagacctggactcgtctgcagag
gaccccagctctcccaggaggaaggctgccgctcggagccgtctctccagctgcagctcg
gagcccaacacaccaaagagcgaggccaagtgcgagggggacatcttcaccttcgacaga
gctggtgctgagtctgaggatgtcttgggggagatggacaaagtgccgtactcctctctc
cggaggactctggaccagcgcagggctctcgttatgcagctcttccatgaacacggcttc
ttcccttcagctcaggccactgcagccttccaggcacgctactcagacaccttccccacc
aaactgtgtctgcagctgaagatcagggaggtgaggcagaagatcatgcagacagccaca
cctggaacccccggaatctctgagcccggcgggtcaacaacaggggtcatgggttcaacg
gactccgcctcggccgccatcggctcctccaataccaacactcgagatggtacaggaacg
gagccaggagaaagagggcggagtcctgaggagcccaggaatgggggcaaattgtag
DBGET
integrated database retrieval system
