Salvelinus namaycush (lake trout): 120022510
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Entry
120022510 CDS
T07522
Symbol
vars2
Name
(RefSeq) valine--tRNA ligase, mitochondrial isoform X1
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120022510 (vars2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
snh01007
]
120022510 (vars2)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
snh03016
]
120022510 (vars2)
Enzymes [BR:
snh01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
120022510 (vars2)
Amino acid related enzymes [BR:
snh01007
]
Aminoacyl-tRNA synthetase
Class I (U)
120022510 (vars2)
Transfer RNA biogenesis [BR:
snh03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
120022510 (vars2)
Prokaryotic type
120022510 (vars2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
tRNA-synt_1g
tRNA-synt_1_2
tRNA-synt_1e
bHLH_ILI
Val_tRNA-synt_C
Motif
Other DBs
NCBI-GeneID:
120022510
NCBI-ProteinID:
XP_038822384
UniProt:
A0A8U0TMP7
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All DBs
Position
27:complement(3514705..3552761)
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AA seq
1094 aa
AA seq
DB search
MWRSACGLSVRAAERAIHRKCSRRLYSHNAAKPPQSTPALRTQAEKERRRRDKEKAILSS
QHNNVEDQGMKWSEKERIAYRVPTPPGEKKDTTVPFPSSYSPEYVETSWYQWWEKEGFFT
PEINDRLPHAVNHSFSMCIPPPNVTGTLHLGHALTVAIEDALVRWRRMQGYKVLWVPGCD
HAGIATQTVVERRLFRERGKRRQDLSREEFLKEVWTWKKEKGEEIYHQLRELGASLDWSR
ACFTMDPGFSSAVTEAFVRLCDSGLIYRSEGLVNWSCALESAISDIEVDSKQLSGRTLLS
VPGYQNRVEFGTMVTFSYPIDGQDGEVAVSTTRPETMLGDVAIAVHPEDPRYQAVHGKQC
RHPFTDRLLPIITDTMVDMELGTGAVKVTPAHDHTDFLLSQRHSLPRLTVIGGDGTMTPL
CGQWLEGVKRFDAREQVIDALTEKMLFRGRRDHAMSLPVCSRSGDVIEPLLKKQWFVRCG
EMAQRAIQAVDEGQLEIIPHFYTKTWSSWLSNISDWCISRQLWWGHQIPAYRVTLPDSTD
TQEEFWVWGRSEEEARERAAGKYGVTADTITLTQDPDVLDTWFSSGLFPFAMLGWPQQTS
DLRQFYPNTILETGSDLIFFWVARMVMLGTELTGQLPFKQVLLHSLVRDKHGRKMSKSLG
NVIDPLDVISGISLERLQEKVKEGNLDPRESMVAMEAQRKDFPKGIPECGTDALRFALCS
YKAQGEDISLSVSQVLSCRHFCNKMWQTVRFTLGVLEDRGDELGTVEQTSPLNSMDQWVC
SRLYSTVLQCEQGFERYELHSVTAALHSFWLHSLCDIYLECIKPVLSQDSGAGGLGQIDT
VHTGRGSQREKQEVRAVLYHCVSVSLALLSPFMPFLTEELWQRLYLLRGEGGDSAVASLC
LQPYPQSSQLAHWHFPQEEADFTLVQEVVRVARSLRAQCGMTKEKPDMWAVCSPSQAQIL
LHFGPAVRTLGRITKLHLHCPQGAGSLSFPSAPPPPKGSAVGVVDHSCQLHLNVQGGVNV
GKLSLQLSQRREKLLSKLEQSLSRTRVPNYLQKVPERVRIETENKISALEQELRNIEEQL
SALQGPPKHNSGQK
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgtggaggtccgcttgtggcctctctgtgagggcagcagagagggcaatacacagaaaa
tgttcacgtaggctctattctcacaatgcggcaaaacctcctcaatcaactcccgctctc
cggacccaggctgagaaagagaggcggaggagagataaggagaaggccatactgagcagt
caacacaataatgttgaagatcaaggaatgaaatggagtgagaaagagaggattgcgtac
agagttccaacacctcctggggagaagaaagacaccaccgtgcccttcccttcgtcctac
agtcctgagtatgtggagaccagttggtaccagtggtgggagaaagaaggcttcttcacc
ccagagatcaatgacagactgccacatgctgtgaatcactccttctccatgtgtatccct
ccgcctaatgtgactggcacgctgcacctcggccatgcactcacagtggccatagaggat
gcattggtccgctggaggaggatgcagggctacaaagttctctgggtaccagggtgtgac
catgcaggcatcgctacacagacagtggtggagaggaggttgtttagggaacgagggaag
cgaagacaggacctcagcagggaggagtttctaaaggaggtgtggacgtggaagaaagag
aagggggaggagatctatcaccagctgagggaacttggtgcgtctctggactggagcaga
gcctgcttcaccatggatccaggcttcagcagtgctgtgaccgaggcctttgtaaggctg
tgtgattctggtctgatctatcgctctgagggcctggtcaactggagctgtgctctggag
tctgccatctctgatatagaggttgactcgaagcagctgtctggcagaaccctgttgtct
gttcctggctaccagaacagggtggagtttgggaccatggtcacctttagctaccctata
gacggccaggatggagaggtggcggtgtcgaccactcgtcctgagaccatgttgggagat
gtggccatcgctgtgcatcctgaggaccctcgatatcaggcagttcatggtaaacagtgc
agacacccattcactgaccgactcttacccatcatcactgacactatggtggacatggag
ctgggtacaggtgctgtaaaggttactccagcacacgaccacactgacttcctgctttcc
cagcggcactctcttcctcgcctcactgtgattggaggagatggcacaatgacccctctc
tgtggccaatggctggagggagtgaagcgttttgatgccagagaacaagtgatcgatgca
ctgacagagaagatgctgttcagagggagaagggatcatgccatgtctttacctgtctgc
agtcgctctggggatgtcatcgaacctcttttgaagaagcagtggtttgtgcgttgtgga
gagatggcccagagagccatacaggcagtagatgagggacagttagagatcattcctcac
ttctacaccaaaacatggagtagctggctgtccaacatcagtgattggtgcatttccagg
cagctttggtggggtcatcagattccagcctatcgagtgactctcccagattctactgac
actcaggaggagttctgggtctggggccggagtgaggaggaggccagagagcgggctgct
ggaaaatatggagtgacagctgacaccattacactgactcaggaccctgatgtattggac
acctggttctcctcagggctcttcccctttgccatgttgggctggccacagcagacaagt
gacctgaggcaattctaccccaacactatcctggaaacaggaagtgacctcatcttcttc
tgggtggccaggatggtgatgcttggcacagaactgactgggcagctgcccttcaaacag
gtgctcctccactctctggtgagggataagcatggcaggaagatgagtaaatctctggga
aatgtcatcgaccctttagatgttatctctggcatctctctggagaggctccaagagaaa
gtgaaggagggcaaccttgaccctcgagagagcatggttgccatggaagcgcagaggaaa
gacttccctaaggggatcccagagtgtggtactgacgcgctccgattcgctctctgctcc
tacaaggcccagggtgaggacatcagtctgtccgtgtcccaggtgctgagctgtagacac
ttctgtaacaagatgtggcagacagtgagattcacgctgggtgtactggaggacagaggg
gatgaactgggaacagtggaacagacctctcctctgaacagtatggaccagtgggtttgt
tctaggctctatagcactgtgctccagtgtgagcagggctttgagagatatgaactccac
tctgttactgctgccctgcactccttctggctgcacagcctctgtgacatctacctggag
tgcatcaagccagtgctgagccaggactctggcgccggggggttgggtcagatcgacaca
gtgcacactgggagaggtagccagagagagaagcaggaggtcagggctgttctctaccac
tgtgtgtctgtctctctggccctcctctctcccttcatgcccttcctcactgaggagctg
tggcagaggctctaccttctcaggggagagggtggtgatagcgccgtggctagcttgtgt
ctacagccatacccacagtcttcacaactggcacactggcacttcccccaggaggaagca
gacttcactctggtccaggaagtggtgagagtagccaggtccctcagggcccagtgtggc
atgaccaaggaaaagcctgacatgtgggccgtgtgttcgcccagccaagcccagatcctg
ctccactttggccctgctgtacggaccctgggccgaatcaccaagctccacctccactgt
cctcagggggccggctccctgtccttcccgtcggctccgcctccccctaaaggcagtgct
gtgggtgtggtcgaccactcctgtcagttacacctcaatgttcagggcggtgtgaatgtg
ggcaaacttagtctccagctctcccaacgcagagagaagctcctctctaaactggaacag
tccctctctcgaacccgtgtgccaaactacttacagaaggttccggagcgagtgaggata
gagacagagaacaagatatcagccttggagcaggagctgaggaacattgaggagcagctg
tcagcactacagggacctccgaaacacaactctggtcaaaagtag
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