Salvelinus namaycush (lake trout): 120022682
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Entry
120022682 CDS
T07522
Name
(RefSeq) ribosome biogenesis protein bop1-like isoform X1
KO
K14824
ribosome biogenesis protein ERB1
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
snh03009
]
120022682
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
120022682
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BOP1NT
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_TEP1_2nd
B-prop_COPA_B_2nd
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_IFT122_1st
MIOS_WD40
Motif
Other DBs
NCBI-GeneID:
120022682
NCBI-ProteinID:
XP_038822593
UniProt:
A0A8U0PDJ9
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All DBs
Position
Sna27:complement(8321521..8409520)
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AA seq
782 aa
AA seq
DB search
MRTVNLESQKNGTMSKAKEKSAKKRVVEEDEDQLPIFDKDVTEKKAGEEEDADLSDSEES
MFSGLEDSGSDSHDEEEDAEEGDDEEDDDDDAVILDEILTKSSGVETATEPLATDKNTPT
QPDEKTAPKQKRKMNKGEGVAMDDGGEKGLITTQHGDEYEHDTSDEEDIRNTVGNIPMEW
YQDYPHIGYNLDGKKIFKPIRNKDELDEFLDKMENPDYWRTVHDKTTASDIRLSDEQVDL
VHRLQKGQFGDVNFNEYEPSVDFFTNEVMIHPVTNRPQDKRSFIPSLIEKEKVSKLVHAI
KMGWIKPRKPKESTPQYYDLWAKEDPNAILGRHKMHVPAPKMRLPGHEESYNPPPEYLLT
EEERMAWEQQDAEDRKLPFLPQKHSCLRAVPAFSRFIHERFERCLDLYLCPRQRKMRVNV
NPEDLIPKLPKPKDLQPFPTTMSLVYIGHTSLVRSISASPTGQWLVSGSDDCTVRFWEVN
TGRCMKTLEVGGAVKSVAWNPNPAVCLVAVCFESTVLLLNPALGDKLVVSATDQLITSYE
PPEEDKEQAVTWALSEGPEHNNGLTLTHPKAVKQVVWHGKGDYLASVMPDNGNNMQVLIH
QVSKRRTQNPFRKNKGLVQCVSFHPLRPYFFVATQRYVRVYNLIKQELTKKLMTNCKWIS
SMAIHPGGDNLICGSYDCRLAWFDLDLSTKPYKMLRHHKKALRGVAYHTHYPLFASGADD
GSVIICHGMVYNDLLQNPLIVPVKVLKGHQITHDLGVLDVTFHPTQPWVFSSGADATIRL
FT
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgcgtacggtgaatcttgaatcacagaaaaacggcaccatgagtaaagctaaagaaaag
agtgcgaagaaaagagttgttgaagaggacgaggaccagcttcccatatttgacaaagat
gtcactgagaagaaggctggggaggaggaagatgcagacctctcagatagcgaggagagt
atgttctctggactggaagactctgggagtgacagccacgatgaagaagaggatgctgaa
gaaggggatgatgaagaagatgatgatgatgatgctgtcattcttgatgagattctgacg
aagagtagtggtgttgaaacagctactgaaccgcttgcaacagataagaatacacctacg
cagccagacgaaaaaactgcaccaaagcagaagaggaagatgaataaaggtgagggagtc
gccatggatgacggaggagagaagggactgatcaccactcagcatggggacgagtatgaa
cacgacacctctgatgaagaggacattcgtaacacggtgggcaacattcccatggagtgg
taccaggactaccctcacatcggctataacctggacgggaagaagatctttaagcccatc
aggaacaaagatgaactggatgagttcctggacaagatggagaacccagactactggcgt
acggtccatgacaagacgacagcctcagacatccgtctgtcagacgagcaggtggacctg
gtgcaccgccttcagaaggggcagttcggcgacgtcaacttcaatgagtacgagccgtca
gtggacttcttcaccaacgaggtcatgatccatccggtgaccaacaggccccaggacaaa
cggagcttcatcccctcgctcatagagaaggagaaggtttcgaagctggtccatgccata
aagatgggttggatcaagccccgtaagcccaaagagagcacccctcagtactacgacctg
tgggccaaggaggaccccaacgccatcctggggcgccacaagatgcacgtccccgcaccc
aagatgaggctacctggacacgaggagtcctacaaccctccgcctgaatacctgctcaca
gaggaagagagaatggcgtgggagcagcaggatgcagaggacaggaagctcccgttcctc
ccccagaaacactcctgtctgagggccgtgcccgccttctcccgcttcatccacgagcga
tttgaacgctgcctcgacctctacctgtgtccccgccagcgcaagatgagggtgaatgtg
aatccagaagatctgatccccaagctgcccaaacccaaggacctgcagcccttccccacc
accatgtccctggtgtacattggccacaccagtctggtgcgttccatcagtgcgtctccc
actggccaatggctggtctcaggctcagacgactgtacggtgcgcttctgggaggtcaac
acggggcgatgcatgaagacgctggaggtgggcggagctgtgaagagcgtggcgtggaac
cccaacccggccgtctgcctggtggctgtgtgctttgagagtacagtgctgctgttgaac
ccagctctgggagacaaactggtggtgagcgccacagaccagctgattacctcctatgag
cccccagaggaggacaaggagcaggctgttacgtgggctctgtctgagggcccggagcac
aacaatggcctcaccctcacccaccccaaggcagtgaagcaggtagtttggcacggtaag
ggtgactacctggccagcgtcatgcctgacaacggcaacaacatgcaggtgctcatccac
caggtgagcaagcggcggacgcagaaccccttccgcaagaacaagggcctggtgcagtgc
gtctccttccacccgctgcggccctacttcttcgtggccacgcagcgctacgtgcgcgtc
tacaacctcatcaagcaagagctgaccaagaagctgatgaccaactgcaagtggatctcc
agcatggccattcacccaggaggtgataacctgatctgtggcagctatgactgcagactg
gcctggtttgatctggacctctccaccaaaccctacaagatgctgcggcaccacaagaag
gctttgaggggcgtggcctatcacacacactaccccctattcgcctctggtgctgatgat
ggcagtgtgatcatctgtcacggcatggtctacaatgacctgctccagaaccctctcatt
gttccagtcaaggtactaaagggtcaccagatcacccacgacctgggggtcctagacgtg
accttccaccccacccagccctgggtgttctcctcaggggccgatgccaccatccgcctc
ttcacctaa
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