Salvelinus namaycush (lake trout): 120022784
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Entry
120022784 CDS
T07522
Name
(RefSeq) collagen alpha-1(XIV) chain-like
KO
K08133
collagen type XIV alpha
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
snh00535
]
120022784
Proteoglycans [BR:
snh00535
]
Extracellular matrix (ECM) proteoglycans
Others
120022784
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
VWA_2
Pur_ac_phosph_N
Fn3_nematode
DUF4959
DUF4992
VWA_3
New_glue
Motif
Other DBs
NCBI-GeneID:
120022784
NCBI-ProteinID:
XP_038822708
UniProt:
A0A8U0TP11
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Position
Sna27:29718135..29780467
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AA seq
1435 aa
AA seq
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MAAPRDLVTSEVTARSFRVSWTHSPGTVEKYRVVFYPASGGQPEEKVVQGTVDTVVLNYL
LSLTEYQVAVFAIYARSASEALRGSTTTLALPMVNNLELFDITHNSMRARWRVAEGASGY
MILYAPLTEGDAADEKEVKVAETVNEVELENLTPDTEYTVTVYAMYGEEASDPMTSQETT
LPLTPARNLRFSDVDHSSARLTWEATSKKANGYRIMYVKTNGVQTNEMDVGRITTLLLRN
LTSLTEYTVAIFAIYDEGQAEPLTDSFTTKTVPEPLNLKTSEVSTESFRVTWEHSAQDVV
LYRLTWTPTRGGDTKEMLVNGNRNSHLLTGLRPITEYEVSLIAVFRNEEESDAVTLTEST
VARTTTTTKATTTTTTTRATTTAVVHLGVRNLLLSDHTTFSMEVSWELQDRNVRQYRVAY
VTARGDRAEETKMVPGGQNSLLLQPLLSDTEYKVTVTPVYTDGDGPGVSRMGRTLPLSAP
GNLRVSEEWYNRFRITWDTPPSPTMGYRVVYKPISAPGPALETFVGEDVNTMLILNLMSG
TEYGVRVIASYTTGSSEALTGKARTLYLGVTNLNTYQVRMNSMCAQWSAHRHATLYRVVI
ESLLNGHKQEARLGGGATRHCFNDLTANTQYKISVYAQLQDTEGPAITTTERTFPVPTPA
PTRPPTTTPPPTIPSTKEVCKAAKADLAFLVDGSWSIGDESFLKIIRFLYSTTGALDTIG
PDGTQVAIVQFSDDARTEFKLNSYDNKERLLEAINRISYKGGNTKTGLAIRHVKDTIFTV
GGGIRRGIPKVVVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSE
RHVFFVDDLDAFKKIEEKLVTFVCEAATATCPSVAMSGSTLPGFRMMEMFGLVEGLYGHV
SGVSMEPGTFNSFPCFRLHNNSLLAQPTKFIHPEGLPSDYTITILFRLLPETPKEPFALW
EILNKDNEPLVGVILDNGGKTLTFFNHDYKGQFQTVTFEGPEIKKLFYGSFHKLHLAISK
TNAKAVIDCKLVGEKAINAAGNITTDGLEVLGRMVRSRGKKDNSAPFQLQSFDIVCSTSW
ASRDKCCELPGLRKEEDCPAMPRACTCTQDSKGPPGPTGPPGGPGIRGGRGDRGEPGAVG
PIGPVGDAGTPGLQGPPGPQGPSGRTIMGPPGGPGERGEKGAAGAPGIQGIPGSPGSPGR
EGQTGTRGLPGKDGPQGRTGPTGTMGTPGAPGSPGSSGPPGSLGDQGPPGSAGNKGEKGE
RGDLQSQASVQAIARQVCEQLIQSHMARYSSILNHIPSAPVSVRTIPGPPGEPGRQGGQG
PQGEQGPAGRPGFPGSNGENGQPGARGLSGEKGDKGSPGVGVQGPRGPVGPPGPTGQGRT
GSQGPSGRPGNPGTPGRPGIPGPVGSAGPPGYCDQNSCVGYNVGGNYDTHPPLPL
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcccagagacctagtgacctcagaagtgacggccaggagtttccgggtgtcg
tggacccactcccctggcacggtggagaagtaccgggtggtgttctaccctgccagcggg
ggccagcccgaggagaaggtggtgcagggcacagtggacacagtggtactcaactacctc
ctctccctgactgagtaccaggtggccgtgttcgccatctacgccagatcagctagcgag
gccctccgaggcagcactaccacattggccctacccatggtgaacaacctggagctgttt
gacatcacccacaatagcatgagagcccgctggagggtcgcagagggggcttctggctac
atgatcctctatgccccactgaccgagggagacgccgccgacgagaaggaggtgaaagtg
gctgagactgtgaacgaagtggaactggagaacctgactccagacacagagtacacagtg
accgtgtacgccatgtacggagaggaggccagtgaccctatgaccagtcaggagaccacg
ctacccctgaccccggcgcggaacctccgcttctccgacgtcgaccacagctcggccagg
ctcacctgggaggccacgtccaagaaggccaacggctaccgcatcatgtacgtcaagaca
aacggagtgcagaccaatgagatggatgttggccgcatcaccaccctgttgctgaggaac
ctgacgtcattgacagagtacacggtggccatctttgctatctatgacgagggccaggca
gagccccttactgacagcttcaccactaagacagtcccagagcctctgaacctaaagacc
agtgaagtctccactgagagcttcagggtcacctgggaacactcagcccaagacgtggtc
ctctacagactcacctggaccccaaccagaggaggagacactaaagagatgctagtgaat
ggtaacaggaacagccacctgctgactggactgaggcccatcactgagtacgaagtctct
ctgattgctgtctttagaaacgaggaggaaagcgacgccgtgaccctcacagagtcaaca
gtggcaagaacaacgactaccacaaaagctactacaaccacgactaccacacgagctacc
accacagcagttgtgcatctgggtgtgaggaacctcctgcttagtgatcacaccaccttc
agcatggaggtgtcctgggagctgcaggaccgcaatgtgcgtcagtaccgcgtcgcctat
gtcaccgccaggggcgatcgtgccgaggagacgaaaatggtccccggtggtcagaacagc
ctgctgctgcagccactgctgtctgacacggagtacaaggtgacggtcaccccagtctac
accgacggagacggccccggtgtcagccgcatgggacgcaccttgccgctgtctgctcct
gggaacctgagagtgtcggaggaatggtacaaccgcttccgtatcacctgggacacgccc
ccatccccaactatgggctacagggtcgtctacaaacccatctctgctccgggacctgct
ctggagacctttgtgggcgaggacgtgaacaccatgctgatcctgaacctgatgagcggt
acagagtacggcgtcagggtcatcgcctcctacaccaccggctccagcgaggccctcact
ggcaaggccaggacattatacctgggagtgaccaatctgaacacctaccaggtgaggatg
aacagcatgtgtgcccagtggagtgcccaccgccacgccactctgtaccgtgtggtcatc
gagtcgctgctcaatggacataaacaggaggcaaggctgggaggaggagccacccggcac
tgcttcaatgacctgacagctaacacgcagtacaaaatcagtgtgtacgcccaacttcag
gacacagagggacctgcaatcaccaccacagagagaaccttccctgttcccaccccggca
cccaccagaccgcccactaccacccctcctcccaccataccctcaaccaaggaagtttgc
aaggcagccaaggcagacctggcgttcctagtggatggctcctggagcatcggggatgaa
agcttcctgaaaatcatccgcttcctgtacagcaccacaggagccctcgacaccattgga
ccagatggcactcaggtggccattgtccagtttagtgacgatgctagaaccgagttcaaa
ctcaactcctacgacaacaaggagaggctactagaggccattaaccgcatctcctacaag
ggagggaacaccaagacagggctagccatccggcatgtgaaagacaccatcttcacggtg
gggggagggatccggaggggcatccccaaagtagtggtggtgttgactgacgggcgctct
caggacgatgtcaacaaggtctccaaagagatgcagatggaagggtacattgtctttgcc
attggttttgcggatgcggactacggggagctggtgagcatcgccagcaagcccagcgag
agacacgttttctttgtggacgatttagacgccttcaagaaaattgaggaaaagctggtc
acctttgtttgtgaggctgccactgccacttgtccttcggtggcgatgagtggcagtacc
ttgccaggtttcaggatgatggagatgtttggcctggtggagggtctgtatggacatgta
tcaggagtgtccatggagcctggcaccttcaacagcttcccctgcttccgcctgcacaac
aactccctcctcgcccagcccaccaagtttatccaccctgagggcttgccctctgattac
accatcaccatactgttccgcctactgcctgaaacccccaaagagccctttgcattgtgg
gagatcctcaacaaggacaacgagcccctggtgggcgtcatcctggacaacggtggcaag
accctcaccttcttcaaccacgactacaaaggacagtttcagactgtgaccttcgaggga
cctgagatcaagaagctcttctacggcagtttccacaagctgcacctggctattagcaag
accaacgccaaagctgtcatcgactgtaagctggtgggggagaaggccatcaacgcggcg
ggcaacatcaccacagatggcctggaggtgctgggacgaatggtgcgctcccgggggaag
aaggacaactctgcaccgtttcaactgcagtcgtttgacatcgtctgcagcacgtcctgg
gccagccgagacaagtgctgtgagcttcctggtctgaggaaggaggaggactgtcccgcc
atgccccgtgcctgcacctgcacacaggacagcaaaggcccccccggccccactggaccc
cctggaggtcctgggatcagaggagggagaggggaccgtggagaaccaggagctgtgggg
ccgataggtccagttggggacgctggtactcctgggctgcaggggcctcctggcccccag
ggccccagcggccgcaccatcatgggccccccgggtggtccaggagagagaggtgagaag
ggtgcagctggcgctccaggaatacagggcattcctggatctcctgggtcaccaggtcga
gagggacaaacaggaacacggggactgcctggtaaagatggaccccaggggcgaacagga
cctacagggactatgggcactccaggagctcccggctcaccagggtcaagtggacctcca
gggtcactgggagaccaaggacctcctggttccgctggaaacaaaggagagaagggagaa
agaggtgacctgcaatcccaggcatcggtccaagcaatcgcccggcaggtctgtgagcag
ctgatacagagtcacatggctcgctacagctccatcctcaaccacatccccagtgcaccc
gtttcggtccgcaccattcctggacccccaggagagcccgggcggcagggcggccaagga
ccacagggagagcagggacccgcgggcagaccagggttccccgggtccaacggagagaat
ggacaaccaggagccagaggtttgtcaggagagaagggtgacaagggaagcccaggtgta
ggagtccagggtcccagaggccccgtaggacccccaggaccaacgggtcaggggcggaca
ggtagccagggtccatctggtcggccggggaaccctggaactcctgggcggccgggtatc
cctggaccagtggggtcggctggacctcctggatactgtgaccagaactcttgcgtgggc
tacaacgtaggaggtaattatgacactcatcctcccctaccactgtaa
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