Salvelinus namaycush (lake trout): 120022806
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Entry
120022806 CDS
T07522
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120022806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120022806
03036 Chromosome and associated proteins [BR:
snh03036
]
120022806
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120022806
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120022806
mRNA degradation factors
5'-3' decay
Decapping complex
120022806
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120022806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
120022806
NCBI-ProteinID:
XP_038822733
UniProt:
A0A8U0PCR4
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All DBs
Position
Sna27:complement(35337957..35389950)
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AA seq
492 aa
AA seq
DB search
MAAARTENLGPVVMGLNKQNGQLRGPPKPASPQSGPLVLGSLSDEATGASQKAGAAQEGT
GIRFGDDWKKRLQLPPKDTRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQE
ESIPIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQAIVMVPTRELALQVSQIS
IQISKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMV
MDEADKLLSQDFVVLIEDIISFLAKGRQILLYSATFPISVQKFMAKHLQKPYEINLMEEL
TLKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYI
HAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGR
SGRFGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKNLYVAEFHTANLDCEVEE
ELKETGCQQEEP
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgccagaacagagaaccttggtcctgtcgtcatgggactgaacaagcagaac
gggcagcttagggggccgcctaaaccggcttctccccaatcaggacccctcgtcctgggc
tctctgtcagacgaggccacaggtgcatcccagaaagctggtgctgcccaggagggaact
gggattaggtttggagatgactggaaaaagagactacagctccctcccaaagacaccagg
gtcagaacctctgatgtaacgtccactaagggaaatgagtttgaggactactgtctgaaa
cgggagctcctgatgggcatctttgagatgggctgggagaagccctcccctatccaggag
gagagcattcccatagccctgtcaggacgagacatcctggcccgagccaagaatggaaca
gggaagagtggggcctacctcatccccatgctggagagaatagacctgaagaaggactat
atacaggccattgtgatggtgcccactcgtgagctggccctgcaggttagccagatcagt
atccagatcagtaagcacctgggcggcgtgaaggtcatggccaccacgggcggcaccaac
ctgcgagatgacatcatgcgcctggacgagactgtgcatgtggtcatagccacacccggc
aggatcctagacttgataaagaagggcgtggccaaagtggatagagtccaaatgatggtg
atggatgaggcggacaagctgctgtctcaggactttgtagtgctcatcgaggatatcatc
agcttcctggccaagggccgtcagatcctactctactctgccaccttccccatcagcgtg
cagaagttcatggccaagcacctgcagaagccctatgagatcaacctgatggaggagctg
actctgaagggcatcacccagtactacgcctacgtcactgagagacaaaaagtccactgt
ctcaacacgctcttctcgcggctgcagatcaatcagtccattatcttctgtaactccacc
cagagagttgagctgctggccaagaagatcacccagctgggctactcctgcttctacatc
cacgccaagatgatgcaggagtacagaaaccgtgtgttccacgacttcagaaatggactc
tgcagaaatcttgtctgcaccgatctgttcaccagaggtattgacatccaagccgtcaat
gtcgtcatcaacttcgacttccccaagaacgccgagacatacctgcatcgcattggaaga
tcagggaggtttggtcacctgggcctggccatcaacctgatcacctctgaggaccgcttc
aacctgaagtccatcgaggaccagctagtcaccgacatcaagcccatccctggcagcatc
gacaagaacctgtacgtggccgagttccacaccgccaacctagactgcgaggtggaggag
gagctgaaggagacaggctgccaacaggaggagccctaa
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