Salvelinus namaycush (lake trout): 120022830
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Entry
120022830 CDS
T07522
Name
(RefSeq) AT-rich interactive domain-containing protein 1A-like isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120022830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120022830
03021 Transcription machinery [BR:
snh03021
]
120022830
03036 Chromosome and associated proteins [BR:
snh03036
]
120022830
Transcription factors [BR:
snh03000
]
Eukaryotic type
Helix-turn-helix
ARID
120022830
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120022830
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120022830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
120022830
NCBI-ProteinID:
XP_038822777
UniProt:
A0A8U0PDC5
LinkDB
All DBs
Position
Sna27:complement(21554372..21639155)
Genome browser
AA seq
2317 aa
AA seq
DB search
MAAQVASVATLNTSPPSELKKPDRDPLEESVPGEKQHENKESGSDNGSPGQKDLQDGADA
GNVGGGGEPDMKNGNSSRVNNNNQNDTGGPEGNNHPGMGHHHQGSFPPPPYEYNQHYSRG
PFHQHGGQQSPGMAAAAGPAVQSGNMMDPYPPNSHDHGFPNHFNNYSPFPNRTSYQGQGY
AMNSPRNNQPPAAGGQPVKQQPAGGTTAMAASYNNQRYNMGNTQPTSTPTLNQLLTSPSS
TRSYQNYPQGDYSNQEGASKGAADMASSQYGGGHPGWQQRSQQPPMSPGNTGQPLNRNQP
PMDHVGKMRGQGYGGANPYSQQQQQGQGQGPPPPGAQQGASYPGQGYGPPGPQRYPMGMQ
GRTPTGMAGMQYGQQIAGFGQQGPGGYGQQSQGYYSPHGPPPHAGQQQAPYPQQPQTTPG
TQAPYPQQGQPGPQGQGPPQGGPPQAQPPYNQGPPQPPQQPGPQQGQPGPQQGQPGPQGQ
GPQPSYPQQQGPPGPGQGQQPPQQQPPSQQQGPPQQQQGPPQQQQDRAAPPQAQPPPGHQ
QPPVHQPPLGHQSSPGSQGHHPSPGHGGPPQQQGQSQQGQPSPYSQTPPLQQQQQQQSPF
QRFPPPPQELSQDSFSSQSSAPPSNQPMTSNKSGAEDSMQGRPSSLPDLSGSIDDLPTGT
EGALSPGVSTSGVSSSQGEQSNPAQSPFSPHTSPHLPDIRGPSPSPVGSPASVTPSRSGP
LSPAAVPGNQMPPRPPSVHSDGILHTSMGQSAMGQSAMGQDRVYLRNPQMPPYVSPQQPG
SALSPRQSSGGQMHPGMGPYPQNNSMGNYGPQGGQYGPQGYPRQPGYSGMPNANYPGGPG
GMNPMPGQAGGAPYAGMPPGRMGPGQMGARPYGPGMGPNMGPGIPPQVTSGMCPPPGMNR
KGPGGPPDAASAMHHGANSIHNRPPGYPPNMPQGMMGAGPPYGPGPGAINSMQGMMNQGG
PYGGGPMGGNMANNTPGMAPSPEFGIDVKLSPAQKMNNKVDGTPKPETKKVKKKSNSSTT
TNEKITRLYELGPELERRTWVDRYLAFAEDKAMGMTNLPAVGRKPLDLFRLYVSVKEIGG
LTQVNKNKKWRELSTNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDLFTDAKK
TTQPKIQPPSPAGSGSLQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQMPPMPVRLQDPF
ADGGDPAFARRNSMTPNSYQPGMGGPEMMGHMGPYESNKDPFGGMRKAGEQFMTPGPGPN
SGMEGQFNRGPPGPMGPNMQMGPRQQYPYGPGYDRRQEPGMGPDGSMGPGAPQPNLMPSG
ADSGMYSPSRPPPQQRHDSYGNQYPGQGAPPGGPYPNQQPGMFPQQQPNYKRPPVDGGYG
PPAKRHEGDGMYNVPFSGQQQPGPQPSGGPQGQQDMYNQYNAGYPGSDRRPPGPQGQFPF
PFGRDRGPSSGGPNSQSPMPPQMMGSPMQAASDGPQGPMWQGRNEMGYPNYPNRQGPPGP
GQGPPQGYHGMNRSEEMMPGADQRMNHEGQWPGHPSQRQSPYGPGGSGPPMSRPLQSNYQ
SSQNHISQVSSSAPMPRPMESRTSPSKSPYVHSGIKMQKAGPPVPASHIGQAPVQPPLIR
RDIAFPPGSVEASQPILKPRVRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLY
DDNSISTFNLCQLPGFLELVVEYFRRCLIEIFCILKEYEVGDPGQRTLIDPHAADEDCSD
EELPEQEDMEEEEDEEEEDERKSNADTTSSQQVQVKKEEEEEKSTTEKSTAEKEKEREGG
ESSSTSSAPQNLSLLQEKPKQASKFDKLPIKMVRKKDPFPGGRSSKLGRRQSFDSGLIHW
SIGGGDTTEHIQTHFESRSDLHKQRKRVLPSATESRKVAMPATVSEEPEKTTKPGKEEQT
TSPAEKTSTPTTPAPVTATIDDVLSARPGSVTEEAVRGAAEEQKENRGKFLFSIRQAQQS
RRNVTILEDEPHSKDETPLSTLSDWQDALARRCVCVSNIVRSLSFIPGNDLEMSKHPGLL
LLLGRLVLLHHRHPERKQAPVTYEKEEDEDERVSCERDEWWWDCLEVLRENCLVTLANIS
GQLDLSIYPESICLPLLDGLLHWAVCPSAEALDPFPMLGPHGALSPQRLVLETLSKLSIQ
DNNVDLILATPPFSRLEKLYGTLVRLVGERKVAVCREMSVVLLANLAQGDSMAARAIAVQ
KASVGNLLGFLEDSLAATQYQQSQSSMMHLQGAHFEPTSVDMMRRAARALHAMAKVEENH
SEFTLYESRLLDISVSPLMNSLVSHVICDVLFLIGQS
NT seq
6954 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcaggtcgctagcgtcgccactctcaacactagcccgccatccgaacttaaa
aagccggatcgggacccactggaggagtcggtaccgggagagaaacaacatgaaaataag
gaatctggatctgacaacggatctccgggccagaaggatctgcaggacggggccgatgct
ggaaatgtaggaggaggaggggagcctgacatgaagaacgggaactcgtccagggtgaat
aataacaaccaaaatgatacggggggaccggaggggaataaccaccccgggatgggccat
caccaccagggctcattccctccacctccttacgagtacaaccagcactacagccggggc
ccttttcatcaacatggcggacaacaaagccctggcatggcagctgcagcggggccggca
gtgcagtcaggcaacatgatggacccatacccgcccaactcacacgaccacggcttcccc
aaccattttaacaactacagccccttcccgaaccggacttcttatcagggccaaggatac
gccatgaattccccgcgtaataaccagcccccggcggctggggggcagccagtcaagcaa
cagccagcaggcggaactacagccatggctgcctcgtacaataatcagaggtataacatg
ggaaacacacagcccacgtctaccccgacattaaatcagctcctaacgtctccaagctct
acgaggagctaccagaactacccacaaggagactatagtaaccaggaaggggctagcaag
ggagcagcagatatggccagcagtcaatatggtgggggtcatccgggttggcaacaaagg
agccagcagccgcctatgagcccagggaacacgggacaacctctgaacagaaaccagccc
cctatggaccatgtagggaagatgcggggccaggggtacggtggagccaacccctactcc
cagcagcagcagcaaggccaggggcagggccctcctcctccaggggcccaacagggtgcc
tcctacccaggccagggctatggacccccggggcctcaaagatatcctatgggcatgcag
ggacgcacccccaccggcatggctggcatgcaatacggacaacagattgccggctttggg
cagcagggtccagggggctacggtcagcagagccagggctactacagcccgcacggcccc
ccaccacacgctggccagcagcaggccccctacccccagcagccccagactacccctgga
acccaggccccgtacccccagcagggtcagcccgggccccagggccaagggcctccgcaa
gggggtccaccccaggcccagccaccctacaaccagggaccaccccagcccccgcagcag
ccggggccccagcagggccagcccgggccccagcagggccagcccgggccccagggtcag
ggcccccagcccagctaccctcagcagcaaggacccccaggcccagggcaggggcagcag
cctccacagcagcaacccccctcgcagcaacaaggacccccgcagcagcagcaaggaccc
ccgcagcagcagcaagatagggcggcccctccacaggcccagccacccccaggccatcaa
caacccccagtccaccagccacccctcggccaccaatcctccccgggctcccagggccac
cacccatctccaggtcacggtggacccccacagcagcagggtcagtctcagcagggccag
ccctcaccctactcccagaccccacccctgcagcagcagcagcagcagcagtcgcccttc
cagcggtttccacctccgccacaggagctctcccaggactcattcagctcccagtccagt
gctcccccctccaaccagcctatgacttccaacaagagtggcgcagaggacagcatgcag
ggacggccttctagtttaccagacctctctggttccatagatgacttgccgacgggtacg
gagggggctctgagtccgggcgtcagcacgtcgggggtgtccagtagccagggggaacag
agtaaccccgcccagtcacccttctcaccccacacctcgccccacttgcctgacatccgc
ggaccctccccctcccccgtgggctcccctgccagcgtcaccccctcgcgctccggaccc
ctgtcacctgctgccgtgccaggtaaccagatgcctccccggccgcccagcgtccattca
gacggcattctccacacatccatgggccagtcagccatgggccagtcagccatgggccag
gacagggtgtacctgcgtaacccccagatgcctccctacgtgtcgccgcagcaacctggc
tccgccttatcccctcgccagtcatcgggaggccagatgcatcctgggatggggccgtac
cctcagaacaactccatggggaactacggccctcagggtggacagtacggaccacaaggt
taccccagacagcccggctacagtggcatgcccaacgccaactaccctggtggtccgggg
ggcatgaaccctatgccaggccaggctggtggggcgccatatgcaggcatgccccctggc
aggatgggtccgggtcagatgggtgcccgcccctacggccccgggatgggccccaacatg
ggccccggcatacctccacaggtgacctctgggatgtgcccccctccaggcatgaacagg
aagggccccgggggccctccggatgcagcctctgccatgcaccacggagccaactccata
cacaacaggcctccaggttacccccccaatatgccccaggggatgatgggagcagggcct
ccgtatggccctgggccgggggccatcaacagcatgcaaggtatgatgaaccagggagga
ccctacggaggagggccgatgggagggaacatggccaacaacacacctggcatggctcct
agccctgagtttggcatcgatgtcaaactgagcccagcacagaagatgaacaacaaggtg
gacggcacgcccaaacctgaaaccaagaaggtaaagaagaagtcaaactcttcgacgacg
accaatgagaagataactcgtctgtatgagctgggtccggagctggagaggaggacgtgg
gtagaccggtacctggcgttcgctgaggataaggccatgggcatgaccaaccttcccgcc
gtgggacgaaaacctctagacctcttcagactttacgtctcggtcaaagagatcggaggc
ctcacacaggtgaacaagaataagaagtggagggagttgtccaccaacctgaacgtgggc
acgtccagcagcgccgccagctccctgaagaagcagtacatccagtgtctgtacgccttc
gagtgcaagatcgaacgtggcgaggacccgcccccggatctcttcactgacgccaaaaag
accacccagcccaagatccagccccccagcccagctgggtctggatctctgcagggcccc
cagaccccccagtccaccagtagttccatggcggaggggggagacttgaagccccccacc
ccagcctccacccctcacagccagatgccccctatgcccgtcaggctgcaggatccgttt
gcagacgggggtgacccagcgtttgccagacggaactccatgacccccaacagctaccag
cctgggatgggtggtccggagatgatgggtcacatggggccctacgaatccaacaaggac
ccctttggtggcatgaggaaagctggagagcaattcatgactccagggccgggtcctaac
agtggtatggaggggcagttcaacagaggccccccagggcccatgggccccaacatgcag
atgggtccgagacaacagtacccctacggacctggatatgacaggagacaggagccaggg
atgggtcctgacggcagtatgggtcctggggccccccagcccaacctgatgccttcaggg
gccgactcggggatgtactcccctagccgacccccaccgcagcaacgtcatgattcctat
ggtaatcaatatcctggtcaaggagcgccacctggtggcccctaccccaatcagcagcca
ggaatgtttccacagcaacaacccaactacaagcgtcctccagtggatgggggctacggt
cccccagcgaagcgtcatgagggggatgggatgtacaatgtccccttcagcggtcagcag
cagccagggccccagccctccgggggcccccagggccaacaagacatgtacaatcagtac
aacgcaggctaccccggctctgaccgccgaccacctggcccccagggccagttccctttc
cccttcggccgagaccgggggccctccagcgggggccccaactcccagtcccccatgcct
ccccaaatgatgggcagccctatgcaggcagcctctgacggcccccagggccccatgtgg
cagggacgcaacgagatgggctaccccaactaccccaaccgccaggggcctccaggacct
ggccagggccccccccagggctaccacggcatgaaccgctctgaggagatgatgccaggg
gctgaccagcggatgaaccatgagggccagtggcctggacaccccagccagagacagtcc
ccctacgggccggggggctcgggcccccccatgtccagacccctgcaatccaactatcag
agctcccagaaccatatttcccaggtgtccagctccgcccccatgccccgccccatggag
agccggacgtccccctccaagtcgccctacgtgcactcaggcatcaagatgcagaaggcg
gggccccccgtgcccgcgtcccacataggccaggcccccgtgcagccccccctaatcagg
cgggacatagccttccccccagggtcggtggaggcctcccaacccatcctcaaaccccga
gtacgactcaccatgaaagacatcggcaccccagaggcctggagagtgatgatgtcactg
aagtcaggcttactagcagagagcacgtgggccttggacaccattaatatcctactctac
gatgacaacagcatttctactttcaacctctgccagctgcctgggttcctggagctggta
gtggagtatttcagacgctgcctcatcgagatcttctgcattctaaaggagtatgaggtg
ggagaccctggccagcggacgctcatcgacccgcatgctgccgacgaagactgctctgac
gaagagcttccagagcaggaggacatggaggaggaagaggacgaagaggaggaggacgag
aggaagagcaacgcagacaccacctcgtcgcagcaggtccaggtgaaaaaggaggaggaa
gaggagaaatccacgactgagaagtcgacagcggaaaaggagaaggagagggaaggaggg
gagtcttcttccacctcctcggccccccagaacctcagcctcctacaggagaaacccaaa
caggccagtaagttcgacaagctgcccatcaagatggtgcgtaagaaagatcccttccct
gggggccgttccagtaagctaggccggcggcagagctttgacagcggactaatccactgg
agcatcggcgggggggacaccacggaacacatccagactcacttcgagagccggtccgac
ctccataagcagcggaagcgggtgctgccatcagccaccgagagtagaaaggtcgccatg
cccgcgacggtgtcagaggaaccagagaagactactaagcctggcaaggaagagcagacc
acctcccctgcagagaagacctccaccccaaccacgcccgccccggtcaccgccaccatc
gacgacgtcctgtcggcccggccgggctctgtgacggaggaggcggtgcgaggagcagcc
gaggagcagaaggagaacagggggaagttcctgttctccatccgtcaggcgcagcagagc
cgacgcaacgtcaccatcctggaggacgagcctcacagcaaggacgagaccccgctgagc
acgctgtcggactggcaggatgccctggcccgccgctgtgtctgcgtctccaacatcgtc
cgctcgctgtctttcatccccggcaacgacctggagatgtccaaacacccggggctgctg
ctgctgctgggccgtctggttctgctccaccaccgtcacccagagaggaaacaggccccc
gtcacctacgagaaggaggaggacgaggacgagagggtgagctgtgagagggacgagtgg
tggtgggactgtctggaggtcctcagggagaactgcctggtcactctggctaacatctcc
ggccagttggacttgtccatctacccagagagcatctgtttgcccctgctggacggcctg
cttcattgggctgtttgtccttcggccgaggccctggaccctttccccatgctggggccc
catggggccctatccccccagagactggtgctggagaccctcagcaagctgagcatccag
gacaacaacgtggaccttatcctggccacgccgccgttcagccggctggagaagctgtac
gggacgctggtgcgcctggttggggagaggaaggtggctgtctgcagggagatgtctgtg
gtcttactggccaacctggcccagggagacagcatggcggccagggccatcgccgtgcag
aaggccagcgtaggtaacctcctgggcttcctggaggacagtctagcagccacgcagtac
cagcagagccagagttccatgatgcacctacagggggcgcactttgagcccactagcgtg
gacatgatgcggcgagcggcccgcgccctgcatgccatggctaaggtggaggagaaccac
tcagagttcaccctgtatgagtcccgcctactggacatctctgtctcaccactcatgaac
tctctggtgtcccatgtgatctgtgacgtactctttctgattggccagtcatga
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integrated database retrieval system
