Salvelinus namaycush (lake trout): 120022859
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Entry
120022859 CDS
T07522
Name
(RefSeq) nuclear receptor subfamily 1 group D member 2-like
KO
K08531
nuclear receptor subfamily 1 group D member 2
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120022859
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
snh03310
]
120022859
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
120022859
Nuclear receptors [BR:
snh03310
]
1. Thyroid hormone like
1D. Rev-Erb
120022859
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
120022859
NCBI-ProteinID:
XP_038822826
UniProt:
A0A8U0TP91
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Position
Sna27:24234238..24245770
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AA seq
630 aa
AA seq
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MESTKAGGVIAYISSSSPESCHSDSNDCYNSSSLTHNSSHSCRQGNVVDTPLTMLGLPLA
HTTSKTSAKCSITKINGLVLLCKVCGDIASGFHYGVHACEGCKGFFRRSIQQNIQYKKCL
KNESCAIMRINRNRCQQCRFKKCLLVGMSKDSVRFGRIPKREKQRMLLEMQSAVNNMMNN
NSQLHSQLHGNTPLPLANQPQVPACPGEPRPQDVDSGLGSASSSTSPTASPGSNQSEEPK
HHPESAVAMDTSPSPISASPSSGSDRGSEDGIGSVTRAHQETFMYNQKQGSPSPQSDAQQ
TSPGEEQHVSDTGKRIEERNRNQQNDLSPFTATQAHDQAQERPTNTGPQGPDRHHCQEND
TTTPSHCPYSRGTPTPTQNQCPYSRDRLPNSSPSGYFPAYTHHGGNNSTSQATSNSHGGF
TGPLWSGGNRMHLLCPMNTSPHVNPHKSGHGIWEEFSHSFTPAVREVVEFAKQIPGFSDL
SQHDQVSLLKAGTFEVLVIRFASLFDVKDRTVTFLGGTKYSVETLRAMGAGDFLTSMMDF
SENLMRLGLSEEEMSLFTTVVLISADRSGIENVNSVEALQETLIRHLKGLITKNHTNESA
IFTKLLLRLPELRSLNNMHSEQLLAFKVHH
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggaatctacaaaagcagggggtgtaatagcctacatcagctcctccagccctgagtca
tgtcatagtgactcaaatgactgctacaactcctcctccctgacacacaactcctcccac
agctgtcgccagggcaacgtggtggacacgcccctaaccatgttaggtctcccactggcc
catactacatcaaagaccagtgcaaaatgcagcattactaaaatcaacggcctggtgctg
ctgtgtaaggtgtgtggagatattgcatctggattccactatggggtccatgcctgtgag
ggctgcaagggtttctttcgtcggagcatccagcagaacatccagtataagaagtgcctg
aagaacgagagctgtgccatcatgaggatcaacaggaaccgctgccagcagtgtcgcttc
aagaagtgtctgctggtcggcatgtccaaggactctgtgcgtttcggccgcatcccaaag
cgtgagaagcagcgcatgctgctagagatgcagagtgccgtgaacaacatgatgaacaac
aacagccagctacacagccagctccacggcaacacccccctccccctggccaatcagcct
caggtgccagcctgccctggggagccccgcccccaagatgttgactctggtttaggctcc
gcctcttcctccacctctcccaccgcttcccccggatccaaccaatcagaggagcccaaa
catcacccagagtctgcggtcgccatggatacaagcccaagccctatatcggcgtctcca
tcaagtggttcagaccgcgggtcagaggatgggattggctcggtgacccgggcccaccag
gagaccttcatgtacaatcagaagcaaggtagcccctccccccagtccgatgcccagcag
acctccccgggggaggagcaacatgtcagtgacactggaaagaggatagaggagaggaac
cggaaccagcagaatgacctgtccccattcacagccactcaggcccacgaccaggctcag
gagaggcccaccaacactgggcctcagggccctgacaggcaccattgccaggagaacgac
accaccacccccagccattgcccctacagcagaggtactcccacccccacccagaatcaa
tgtccctacagcagagacagactgcccaacagctcccctagtggctatttcccagcctac
acccaccatggaggcaacaacagcactagccaggccacctccaactcccatggaggattc
acaggaccactgtggagcgggggcaacaggatgcatctgctgtgtcccatgaacacatct
ccccatgtgaatccccataagtcaggccatgggatctgggaggagttcagccacagtttc
accccggccgtcagggaggtggtggagtttgccaagcagatcccaggcttcagcgacctc
tctcaacacgaccaggtcagcctgctcaaggctggtacctttgaggtgctagtgatccgt
tttgcgtcgctgtttgacgtgaaagaccgcaccgtgacattcctgggtggtaccaagtac
agcgtggagacgttacgagccatgggcgccggcgacttcctgacctccatgatggacttc
agcgaaaatctgatgcggctcggccttagcgaggaggagatgagcctgttcaccactgtt
gtcctcatctctgccgatcgctcagggattgagaacgtgaactctgtggaggcgcttcag
gagactctgatccggcacctgaagggcctcatcactaagaaccacaccaacgagtcggcc
atattcaccaagctgctcctcagactgcccgaactgcgctcccttaataacatgcactct
gagcagctgctggccttcaaggtccatcactag
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