Salvelinus namaycush (lake trout): 120023016
Help
Entry
120023016 CDS
T07522
Name
(RefSeq) LOW QUALITY PROTEIN: tubby-related protein 4-like
KO
K24720
tubby-related protein 4
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
snh04990
]
120023016
Domain-containing proteins not elsewhere classified [BR:
snh04990
]
Other domain-containing proteins
Tubby family proteins
120023016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR35_TULP_N
Tub
ANAPC4_WD40
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Ribosomal_60s
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
120023016
NCBI-ProteinID:
XP_038822895
UniProt:
A0A8U0PDQ2
LinkDB
All DBs
Position
Sna28:8283526..8292482
Genome browser
AA seq
1940 aa
AA seq
DB search
MLAAVEHGPILCSDSNILCLSWKGRVPKSEKDKPVCQRRYYEEGWLATGNGRGVVGVTFT
SSHCRRDRNTPQRINFNLRGHNSEVVLVRWNEPFQKLATCDMEGGIFVWIQYEGRWSVEL
VNDRGAQVSDFTWSHDGSQALIAYRDGFVLVGSVSGQRHWSSEINLESQITCGIWTPDDQ
QVLFGTADGQVIVMDCHGRMIAHVLLHESDGIVGMSWNCPCFLVEDSTESDTDSDDNNTP
QGKIMXXLLLRNLKPVLTVSFISGDISLMNNYDDLAPTVIRSGLKDVEVQWCSQGDLLAV
AGMERHGVPGVPSGSIMRNALVKFYNVQGEHIYTLETPAQRPITTICWGHRDSRLFLACG
PALYVVRVEHRVASLQLLCQQGIASALREERDVGKLNMPSLLCSYVTTAFIPTIKPPIPD
PNNIRDFVSYPTAGNERLHCTMKRAEDNPEAGGPCYTLYLEHLGGLVPILKGRRISKLRP
EFIIMDPKTDSKADEVCVNAMISYMTDSCNCSDSSDIELSDEWVGKKSPKLSRGNRSPKH
SRRNIESRKSPKTSRTSQEGLRSPRLPTKKPLIRSPSLTRREMSMDGISEHNYLAQVTSN
IWGTKFKIVGLASFLPANLGAVIYKTSLLHLQPRQMTIYLPEVRRISLDFMSLPVFNPNV
FSEDEDDLPVTGPSGVTGDNPPCTVNIPIAPIHSPAQAMSPTQSIGLVQSLLANQNIQLD
VLTNPTATASAAAAAAAAAAAAAASASVLGSDHGQDAVAVHYSGTLGRYSNPGQVIFNGL
EMGPLLAGTLPPPPPQHNLPQQPHQQRPQSQQTHQQQQSKQPQQIQTQQPQQQQQQRMQH
QQLQHQQPQIPQHQQLQHQQPQIPQHQQLQHQQPQIPQHHQHLQQLHIQQIQQQQQQQTQ
QHQALQQQYQQQQAALQQQQQQIQQQHQHLQQQQIAQQHQQMQLQHEQMHQQQQQMQQQQ
QQIRQQIIEMRQQQQQLQQQHQQIQQQHQQMQRQHQQMQQQLKLQITLPPPPTGYPAISL
QQFQVPHPSPELGPERGQQGHTQSHTLGRPSLPRSRPPSFIDVDSLRSRPPSFLEADTSR
SRPPSFIDIDTIRTRPPSFIDVDTGTLRSRPLSFLDADSSRSRTLSFIDTDTLRSRPPSF
LDAETSLEIQMRKVNAPPPYPGTVVSAATATTSTAPQTLITNCDNPNILVTADPCLKKDE
FSLHPVGLQYQMGYERITTFDSSGNVEEVCRPRRRLIRNQNAYAVQGMGGSATLKVTSSS
DSKKVHLPYSSATLSRLSVPRYSIPSGDPPPYPDPANQVNINTTTLPPPQRMDSSHMIHA
TLRRDRRDGESRLKVSQMVDASRTLPSKSKINSAALALSYQQRVPTALYTCTQCSSNSSS
TSVSVSGGGSSSSGIAGGTVVRQDFPPGKGAHHSTIIVHSKSTSPLASQSSYNLLSPVDN
SRDRTVYVNSAFTEDEALSQQCRHLTLGEVSLTLKRPPPYQWDPNTAEEFWIPQEQTILA
PPPPPTHKPPPPLIFSNAQHLDMTRLPFLLSTKPPSSPSTVTFPSGYQISLSPFPPGGGQ
GGPPLQSMQSPPPPCLPNEVVAPVPQFTQQDPNLVLPPGYPPNLANLACCPLPPMYPGAS
SCAGLQLQPVSLHPWNPYSLPMQDPSGSATLPSKSHQLLEKPVLSPSPPTVPPPPPPSLP
PPPPPTMLPKPKSPTEELTESASSFQEPSSLNDSPVPDRQGTDRFSKKSRKRLDSRAEEA
NMTTVSEGKSKKEGRALSDFNSLISSPRLGGREKKKPKGQREQLNKTKKLNRTSTTSEFQ
DSSESEPELFISGDELMNQSQSSKKGWKSKRSLRMASELEEIKCRKANEREDRGLGSQGF
VYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELDGRQVMQFGRIDGNAYILDFQY
PFSAVQAFAVALANVTQRLK
NT seq
5823 nt
NT seq
+upstream
nt +downstream
nt
atgttagctgctgtggaacatggtcccatcctctgcagcgactccaacatcctctgcctc
tcctggaagggccgggtccccaagagcgagaaggacaaaccggtgtgccagcggcgctac
tatgaggagggctggttggccactgggaacgggagaggggtggtgggcgtaacgttcaca
tccagccactgcaggagagacaggaacacccctcagagaatcaactttaacctgcgagga
cacaacagtgaggttgtgttggtccgttggaatgagccctttcagaagctggccacgtgt
gacatggagggaggcatctttgtttggattcaatatgagggacggtggtctgtggagtta
gtgaatgaccgcggtgcccaggtgagtgacttcacatggtctcatgatggcagccaggcc
ctgatcgcctaccgggatgggtttgtcctagtggggtcagtcagcggacagagacactgg
tcctcagagattaacctggagagccagatcacctgtggcatctggacacctgatgaccaa
caggtgttgtttggtacggctgatggtcaggtgatagtgatggactgccatggtcgtatg
atcgcccacgtcctcctgcatgagtcagatggcattgtcggcatgtcctggaactgtccc
tgtttcctggtggaggacagcacagagagcgacaccgactctgatgacaataacacacct
caaggcaagatcatgtagtaattattattacgtaacctgaagcccgttctgacagtcagc
ttcatatcaggagacatcagtttgatgaacaactacgatgacctcgctcctaccgtcatc
cgctcaggactaaaagatgtggaggtacagtggtgttcgcagggggacctcctggcagta
gctgggatggagagacatggtgtccctggagtcccctctggctctatcatgaggaacgcc
ctggtcaagttctacaacgtccaaggagaacatatctacacgttagaaacacctgcccag
cgccccatcaccaccatctgctggggccatagagactctcgtctgtttctggcatgtggc
ccggcgctgtatgtggtgcgagtggagcaccgggtggccagcctgcagctgctgtgccaa
cagggcatcgccagcgccctgagggaggagagggacgtgggcaaactcaacatgccttcc
ttactctgctcctatgtcaccaccgccttcatacccaccatcaagcctcccattcctgat
cccaacaacatccgggactttgtcagctaccccacggctggcaacgaaaggttgcactgc
accatgaagcgagcggaggacaaccccgaggcagggggaccctgttacaccctatacctg
gaacacctaggggggctggtgcctatcctcaaaggcagacgcatcagcaagctacgccca
gagttcatcatcatggaccccaaaacagacagcaaagcagacgaggtgtgtgtgaatgct
atgatctcctacatgactgacagctgtaactgttccgactccagcgacattgagttgagt
gatgagtgggtcgggaagaagtcgcctaaactatccagaggaaacaggtctcccaagcat
tccagaaggaacattgaatcaagaaaatctcccaagacgtctaggactagtcaggaaggg
cttcgatcgccaaggttaccaacgaagaagcctctgattcgttctcccagtctgacacgt
cgagagatgtccatggatggaatctctgagcataattacctggctcaagtcacgtccaat
atttgggggactaagttcaaaattgtgggacttgcttctttcttacctgctaatctgggt
gcagttatctataagaccagtttgctccatctacaaccaaggcagatgacaatctacctt
ccagaggtgcggagaatatcacttgacttcatgagcctgccagtctttaaccccaacgtc
ttcagtgaggatgaggatgacttgccagtaacgggaccatctggagtgacaggtgacaac
cctccatgtacggtcaacatccccatcgcgcccatccacagccccgcccaggccatgtcc
cccactcagagcattggtctggtccagtccctgctggccaatcagaacattcagctggat
gtcctgaccaatcccacagctacggcttcagcagcagcagcagcagcagcagcagcagca
gcagcagcggcctcagcctctgttctggggtctgatcatggtcaggatgctgtggcagta
cattacagtgggactctaggaaggtactctaacccaggacaggtgatatttaatgggcta
gagatgggtcccctcctggctggaacgttacctccacctccgcctcaacataacctccct
caacaacctcaccaacaacgtcctcagtcacaacagacgcaccaacaacagcagtccaaa
caaccacagcagatacaaacgcaacagccgcagcagcagcaacaacagaggatgcaacat
caacaactacagcaccaacaaccacagattccacaacatcaacaactacagcaccaacaa
ccacagattccacaacatcaacaactacagcaccaacaaccacagattccacaacatcat
caacacctacaacagcttcacatacagcagatccaacagcagcagcagcaacagactcag
cagcaccaagcactgcaacaacagtaccaacaacaacaggcggcactgcaacagcaacaa
cagcagatccaacagcagcaccaacacttgcaacagcagcaaatcgctcagcagcaccaa
cagatgcaactgcagcacgagcaaatgcatcagcagcagcaacaaatgcagcaacaacaa
cagcagatccgacagcagattattgagatgaggcagcaacagcagcagttgcagcagcag
catcagcagatacaacagcaacaccaacagatgcagaggcagcaccaacaaatgcagcag
caactgaagctgcagatcaccttgccccctccgcctactggctaccccgccatctctttg
cagcagtttcaggtaccccaccccagtccagagttgggaccagaaagaggacagcagggc
catactcagagccatactctgggcaggccaagtctaccgcgatccaggcctccatcattc
attgatgtagacagcttacggtctagacctccttccttcctcgaagcagacacatcaaga
tctaggccgccgtcattcatcgacatagacacaatacggactagacctccttctttcatt
gatgtagataccggtacattgcgatctagacccctgtctttcctcgatgcggactcctcc
cgatctagaactctttcattcatagacacagacacactacggtctagacctccttccttc
ctcgatgcagagacttcccttgagatccagatgaggaaggtgaacgctcccccgccctac
ccaggaaccgtagtgtctgcagccaccgccacaacctccaccgctcctcagaccctcatc
accaactgtgacaaccccaacatactggtcacagcagacccttgtctgaagaaagacgag
ttctcactccacccagttggtctccagtaccagatgggatacgagaggatcacgaccttt
gacagcagtgggaatgtagaggaggtgtgtcgccctcgcagaagactcatacgcaaccag
aacgcctacgctgttcaaggcatgggaggttcggccacacttaaagtcacctcatcgtct
gacagtaagaaagtccatcttccttacagctcagcgactctaagccgcctctcggtgcca
cgatactccatacccagcggagacccgcccccctacccagatccagccaatcaggttaac
attaacacgacaacacttcctcctccccaacgcatggacagtagtcacatgattcacgct
accttgcgacgtgacaggcgagatggggaatcccgcttgaaggtgtcccagatggttgat
gcttcaaggactctaccgtccaagtctaagatcaacagtgctgcactagcgctctcttac
cagcagagggtgccaacagctctatatacctgcactcagtgcagcagcaacagcagcagc
accagtgtcagcgttagcgggggtggtagtagcagcagtggcatagcaggaggcactgtg
gtgcggcaggatttcccaccaggaaaaggtgctcatcacagcaccatcattgtccactcc
aaaagcacttcacctcttgcttctcagtcatcgtacaatctgctgagtcctgttgataac
agcagggataggactgtatacgtgaactctgcctttactgaagacgaggcattaagtcag
cagtgtcgtcacttgactcttggggaggttagtttgactctgaaacgtcctccgccatac
cagtgggacccaaacaccgcagaggagttctggatacctcaagaacagactatcttagct
ccccctccaccaccaacgcacaagcccccacccccactcatcttcagcaatgctcagcac
ctggacatgacgcggctgcctttcctactctcaacaaaaccccccagcagcccaagcact
gttactttcccatcgggttaccagatctccctgtcacctttccctccagggggaggtcag
ggtggacccccactccagtcaatgcagagccctccaccaccctgccttcccaacgaagta
gttgccccagttccccagttcacccagcaggaccccaacctggtcttgccacctggatac
cctcccaaccttgccaacctggcttgctgccctctgccaccgatgtacccaggagctagc
tcctgtgccgggcttcagctgcaacctgttagcctgcacccctggaacccctacagccta
cccatgcaggacccctcgggctctgccaccctgcccagcaagtctcatcaactgttagag
aagccagtcctctccccatctcctcctacggttcctcctcccccacctccttcacttcct
cctcctcctccaccaaccatgctgccaaaacccaaaagccccacagaggagctgacggaa
tctgccagtagcttccaggagccgtcttctctaaatgacagccctgttccagaccggcag
gggactgacaggttcagcaagaagagccgtaaacgtctggacagccgagctgaggaggca
aacatgaccaccgtctcagagggaaaatccaaaaaggaagggcgcgccctctccgacttc
aactccctcatctccagccccaggctgggcggcagggagaagaagaaacccaaaggccag
agggagcagctgaacaaaaccaagaagctcaacaggacaagtaccaccagcgagttccag
gatagttctgagagtgagcccgagctcttcatcagtggagacgaactgatgaaccagagc
cagagctccaagaagggctggaagagtaagaggagcctgaggatggccagtgaactggaa
gagatcaagtgcaggaaggccaatgagagagaggaccgcgggctgggcagccagggattc
gtctacgtcatggccaataagcagccactctggaacgaggcaacacaagtctaccagctg
gactttggaggacgggtcactcaggagtctgctaagaactttcagatcgagttggatggc
agacaggtgatgcagtttggcagaatcgatgggaacgcctatatcctggatttccagtat
cctttctcagcagtgcaggcctttgctgtggccttagccaatgttactcaaaggctgaag
tga
DBGET
integrated database retrieval system
