Salvelinus namaycush (lake trout): 120023043
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Entry
120023043 CDS
T07522
Name
(RefSeq) neuronal PAS domain-containing protein 3-like
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120023043
Transcription factors [BR:
snh03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
120023043
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS_11
PAS
PAS_9
HLH
PAS_4
Motif
Other DBs
NCBI-GeneID:
120023043
NCBI-ProteinID:
XP_038822918
UniProt:
A0A8U0TP74
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Position
Sna28:11698499..12018272
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AA seq
1041 aa
AA seq
DB search
MTLVTSRPEEERLQTDSPEDSPGDSPEDSPEDNPEDSPEDSPEDSPEDSPEDSPEDNPED
SPEDNPEDSPEDSPEDSPEDSPEDSPEDSPEDNPEDNPEDSPEDNPEDSPEDSPEEKRKR
EIQQTRKCCDVVYVRLQALRKEKSRDAARSRRGKENFEFYELAKMLPLPGAITSQLDKAS
IIRLTISYLKMRDFANQGDPPWNLRMEGPPPNTSVKAIGDQRRRTPSAVASEIFEPHLGS
HILQSLDGFVFTLNKEGRFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGM
KLPPGRGLLSQGTATEDGASSASSSSHAETPEPVESTSPTLLPPDNILERSFFIRMKSTL
TKRGVHIKSSGYKVIHVTGRLRIRMALTHSRSVPIQIMGMVVVAHALPPPTINEVRIDCQ
MFVTRVHMDLNIVYCENRISDYMDLMAVDIVGKRCYQFIHAEDVDGIRLSHLDLINKGQC
VTKYYRWIQKNGGYIWIQSSATIAINAKNGNEKNIIWVNYVLSNPEYKDTPMDIAQLPNL
PEKASESSETSDSESESKDNSDDNENSKWDRKGNQTENTEDPETDSKKQQQGQSSSEQEM
RRQEEGDSSSNPESQESEDDLEPSDCEVETKEGRLGRLEDLHIKVEHYGDGNGGVDLHDS
PSSSEEEEDDDDDKEDDDSFKDCDSATETLAAPAASKQQKRKKRRKKQKWDGSRPKRLCL
SSATPSSNTFVGAVPLLPPPSPASASVLKIKTEMSESINFDNDSIIWNYPPNREISRNES
PYSMTKPVPAHDTFPSPQPGSLQVSIPDSVLTPPGTEGGSGGAGTRKGVPPSFSGYSSAP
SSASSAASLAPPSGSGSSSDPLSPPLSASPRDNQQCQSTPTTSGSSLLYTSDLEALQRLQ
AGNVALPLVQRVTGTLATTSTAASRLYTTGTIRYAPADVTLAMQAGANLLPHNVTHTMNF
VDVNGSPSFGIDPKTPMEMLYHHVHRLNMAGPFGGTMSGASLTQMPAANVFTTAEGLFST
LPFPVYSNGIHTTQTLERKDD
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgacgctcgttaccagcagacctgaggaggagcgtcttcagacagacagcccagaggac
agcccaggggacagcccagaggacagcccagaggacaacccagaggacagcccagaggac
agtccagaggacagcccagaggacagcccagaggacagcccagaggacaacccagaggac
agtccagaggacaacccagaggacagcccagaggacagcccagaggacagtccagaggac
agcccagaggacagcccagaggacagcccagaggacaacccagaggacaacccagaggac
agcccagaggacaacccagaggacagcccagaggacagcccagaggagaaaaggaaaaga
gaaatacaacaaactagaaagtgctgtgatgttgtgtatgtcaggttgcaggctctgagg
aaggagaagtcccgggatgcggctcgctcgcggcgggggaaggagaactttgagttctat
gagctggctaagatgctgcccctgcccggcgccatcaccagccagctggacaaggcttcc
atcatccgcctcaccatcagctaccttaagatgagagactttgccaaccagggggacccg
ccatggaacctgcgcatggaaggcccaccgcccaacacctccgtcaaagctataggagat
cagcgaaggaggactcccagtgcggtagcctcagagatcttcgagccacacctcgggagc
cacatattgcagtccctggatggatttgtatttacactaaacaaggagggaaggtttttg
tacatctctgagacggtgtctatatacctggggctttcgcaggtggagctgacaggaagt
agtgtgtttgactacgtccaccctggtgatcatgtggagatggcagagcagctgggcatg
aagctgcccccggggcgaggcctcctttctcagggcaccgccaccgaggacggcgccagc
tctgcctcctcctcctcacacgcagagacccccgagccagtcgaatcgaccagccccacc
ctgctgcccccagacaacattctagaacgctccttcttcatccgtatgaagtccacactg
accaagagaggcgtccacatcaagtcttcaggctataaggtgatccatgttacaggcagg
ctgaggatccgtatggcattgacccacagtcggtcggtacccattcagatcatgggcatg
gtggtggtagcccacgccctccccccccccaccatcaacgaggtgcgcatagactgccag
atgtttgtcaccagggtccacatggacctcaacattgtctactgtgagaatagaattagc
gactacatggacctgatggcagtggacatcgtagggaagaggtgttaccagtttattcat
gcggaggatgtggatggcatccggctcagccatttagacttgataaacaagggccagtgt
gtgaccaagtactaccgctggatccagaagaacggtgggtacatctggatccagtccagt
gccaccatcgccatcaatgccaagaacggcaatgaaaagaacataatctgggtcaactac
gtactcagtaatccagagtacaaggacacgcccatggacatcgcccagctacccaacctt
ccagagaaagcctcagagtcttcagagacatccgactctgagtccgagtccaaggacaac
tctgacgacaacgagaactccaagtgggacaggaaggggaaccagactgagaacacagag
gacccggagacagacagtaaaaagcagcagcagggccagtcgtcctcagagcaggagatg
aggcgtcaggaggagggagacagctcctccaacccagagagccaggagagcgaggacgat
ctggagcccagcgactgtgaggtggagaccaaggagggcagactgggccggctggaggac
ctgcacatcaaggtggagcactacggagacggaaacggaggggtggacctgcacgactcg
ccgtcctcctctgaagaagaggaagatgatgatgacgataaggaagatgacgacagcttc
aaagactgtgacagcgccaccgagactctcgccgcccccgctgccagtaagcagcagaaa
cgtaagaagaggaggaaaaagcagaaatgggacggtagtcgtcctaaacgcctgtgcctc
tcctctgccacccccagctctaacacctttgttggggctgtccccctcctgccgcccccc
tcccctgccagtgcctctgtgctcaagatcaaaacggaaatgtccgagtccatcaacttc
gacaatgacagcatcatctggaactacccacccaacagagagatctccaggaatgagtct
ccctacagcatgacgaagcccgtcccagcccacgataccttcccctccccacagcctggt
agtctgcaggtctccatcccagactcagtgctcactcccccaggaacagaggggggcagt
gggggtgcaggtaccaggaagggcgtacccccctccttcagcggttatagcagcgccccc
tcctcggcctccagcgccgccagcctggcccctccctccggctctgggtcctcctccgac
cccctgtccccgcccctctcggcctcgccacgcgacaaccagcaatgtcagagcaccccc
accacgtccggctcctccctgctgtacaccagcgacctggaggccctgcaaaggctgcag
gccgggaacgtggcgcttccactggtccagcgggtcaccggcaccctcgccacgaccagc
actgctgcctcacggctctacaccactggcaccatccgctacgcccctgccgacgtcact
ctggccatgcaggcaggcgccaacctgctgccccacaatgtgacccacactatgaacttt
gtggatgtcaacggtagccccagcttcggcattgaccccaagacgcccatggagatgctg
tatcatcacgtccaccggctcaacatggctggcccttttgggggtaccatgtccggcgcc
agcctcacccagatgccagcagccaatgtattcaccaccgccgagggactgttctccact
cttccattccctgtctacagtaacgggatacacaccacacaaactctggagcgcaaagat
gattag
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