Salvelinus namaycush (lake trout): 120023139
Help
Entry
120023139 CDS
T07522
Name
(RefSeq) SR-related and CTD-associated factor 8-like isoform X1
KO
K13191
RNA-binding protein 16
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120023139
03041 Spliceosome [BR:
snh03041
]
120023139
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120023139
Spliceosome [BR:
snh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
120023139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
DUF3525
Motif
Other DBs
NCBI-GeneID:
120023139
NCBI-ProteinID:
XP_038823060
UniProt:
A0A8U0PE14
LinkDB
All DBs
Position
Sna28:31226009..31262195
Genome browser
AA seq
1544 aa
AA seq
DB search
MEAVKAFNGELYSLNEYKPPISKAKMTNITKSAIKAIKYYKHVVQGVEKFVQKCKPEYKV
PGLYVMDSIVRQSRHQFGQDKDVFAPRFSKNIIGTFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGLPPPSVTPVMTSRDAAVNTPGTPATPATPANIVSSLPDWASQF
SNTDTVAAVAQILQSPHGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQLTA
AATANPMQLNPLEQRISSFNKKMLGHFDFGNDSERSEDPKKDAQSSQMPMVSDSIFHQLA
EQLQQQNLEHFQKQLMEHQQKSMNMEGQDGIFGSENTAMPQQSSSQSQHPAQQNKMDDSI
DNQQQDMDLDDGPEMEEERFEPEDKKSKMVDTRSRTRSRSRSRSPRKRRSRSRSGSRKRK
HRKRSRSRSRERKRKSSRSYSSERQALEREKERQKKGLPPIRSRFLSVCSTTLWVGQVDK
KASPQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYCARQKLSTGSFKIVSKIIKI
AWALNKGVKQEYKQFWDMDLGVTYIPWEKVKLDDLDGFAEGGMIDQETVNAEWEAAKNAP
EPMKEAVSQAVSVEPMTATNTQQTQKEAFSQQEAFSQQEAFSQQEAFSQQEAFSQQEAFS
QQEAFSQQVSMMPVQLPVAQAVPAVGLVPPSFPVSMAMPPPGYGPLPPFLRAGFNASQPP
PGFMQAAGVPQQAGMGSAPISLVPASMSQAQDRMKDSPYGATIPGSFMPSALPGQGVFNQ
LQPGVQTQQAANDKMGQSADGMDAAAELVLQGMQNAMSRGMGLLGMHPSASLTHPLHQQG
LPGQRMPGLMPLDLRPTMLQGAGARFPLLMQQGLSQQSLLEASLHAQARARAASQMERFN
RAEEAFNRGPNPPNESMSKAEDEPSSGADDSQQGGDQDYRFPPPQEKQSTGLLRTPPLEH
RESMGGGAGGGGLGGGRPALLQTPVREPARDSVAGRLQALAGFTPQTQSRWGPLRGDFGE
RDMRSSPAAGFQEARPGSNQGQNFPNRFENQNRAGSAGGVGGGVCTGGVGGGPAWSRGGV
DAAAPFADADMPQDLDECRRPWDRQQRDRDFDFRKEMNGNRRERDSREKERERERERGRE
RGNREREQERDREREREKEREKDRERERERDRNKRGAWTPLLPLPQPLLPTPTLTPTLSL
TQGKPQALLQLQSKLQPKPGLLTKPGLLQTPTLLTRSTSHVSTKSLLQAPSQSLLQAPSQ
SLLQAPSQSLLQAPSQSLLQAPSQSLLQAPSQSLLQAPTQSPPLTSHQSSQSPPKAPPQS
TQFPTQAKNEALPGPVPQAEFHSSPQTQSSPQNQLPPQNQASLQAQSRHPAHSPFQTKSP
PQGQSSSCAQSPPQALSPPRAQSPPQVSPQAPRTPEEITDTQGEPEKPRWANEPEKPQED
PEPMVEPPSRWVNGTGSRMDTDTVAEPTTTPSPTPALSMSLVLTHSPVEPQCLPEPLDQQ
HPSQHVASCSSTKDVDNGLNEPMEEAEKQPVVEKTDTEGTIITQ
NT seq
4635 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtcaaagcattcaacggcgagctctactcgttgaatgagtacaagcctcca
atctccaaggcgaaaatgaccaatattaccaagtctgcaataaaagctataaaatactac
aaacatgttgtccagggcgtggaaaaatttgttcagaaatgcaagccagagtataaggtc
ccaggcctgtatgtcatggactccatcgtgcggcagtcacggcaccagtttggccaggac
aaggatgtgtttgccccgcgcttcagcaaaaacatcatcggaaccttccaacatctctac
cgctgcccctcagatgacaagagtaagattgtcagggtcctcaacctctggcagaagaac
gccgtcttcaagagtgacatcatccagccgttgctggacatggctgcaggactgccccct
cccagtgtcaccccagtcatgaccagccgggatgctgcagtcaacacgcctggtacccca
gcgacaccggccaccccagccaacatcgtatccagtctgcctgactgggcgtcgcagttc
tccaacacagacactgtagctgctgtggcccagatcctgcagagtccacacggccaacag
ctccagcagctggtgcagagcctgcaaatgcagcagcagaagccccagccatctctgctt
caggcgttggatgccggactggtggtccagctgcaggctctgacggcccagctcactgca
gccgccacggccaaccccatgcagctcaaccccctggagcagaggatctcctccttcaac
aagaaaatgttgggccattttgactttgggaacgattcagaacgctctgaagaccccaaa
aaggacgcccaatcatcccagatgcccatggtgtctgactccatcttccaccagctggct
gagcagctgcagcagcagaacctggagcacttccagaagcagctcatggagcaccagcag
aagtccatgaacatggaagggcaggatggaatatttgggtctgagaacacggccatgccc
caacagagcagcagccaatcacagcacccggcgcagcaaaacaagatggacgactcaatt
gacaaccagcagcaggacatggacctggatgacgggccagagatggaggaagagcgcttc
gaaccagaggacaagaagtccaagatggtcgacacgcggtcaagaacacggtctaggtca
cgatcaagatctcccaggaagagacggtccagatcacggtcaggctctcggaaacggaaa
caccgtaagcggtcgcggtcacgctccagagagcggaagaggaagtcgtcgcggtcctac
tccagcgagagacaagccctcgagcgagagaaagagcgtcagaagaaaggactgcctccc
atccgatccaggtttctcagtgtgtgcagcaccactctgtgggtgggacaggtggacaag
aaggccagtccgcaggacctcaccaacctgtttgaagagtttggtcagattgagtcgatc
aatatgatccctcctcgtggctgtgcctacatctgtatggtccacagacaggatgcctac
tgcgcaagacagaaactcagcactggttcattcaagatcgtctccaagatcatcaagatt
gcgtgggcgctgaataagggagtgaagcaggagtataagcagttctgggacatggacctg
ggggtcacctacatcccctgggagaaggtcaagctggacgacctggacggctttgctgag
ggaggcatgatcgaccaggagactgtcaacgccgagtgggaagcagccaagaatgcgcca
gagccaatgaaggaagctgtgagccaagctgtgagcgttgaacccatgacagccaccaac
acccaacagacccaaaaggaggctttcagccaacaggaggccttcagccaacaggaggcc
ttcagccaacaggaggctttcagccaacaggaggctttcagccaacaggaggctttcagc
caacaggaggccttcagccaacaggtctccatgatgcctgtacagctccctgtggctcag
gctgtccctgccgtgggtcttgtgcctccgtccttccctgtttccatggcgatgcctccg
ccaggctatggccccctgccccccttcctcagagcaggtttcaacgcctcccagcctcct
ccaggattcatgcaggcagcaggtgttcctcagcaagcaggcatgggctcagctcctata
tctctagtgccggcctccatgtcgcaggctcaggacaggatgaaggactccccatacgga
gctactatcccggggagcttcatgccctctgccctccctggacaaggggtcttcaaccag
cttcaacccggagtccagacgcagcaagcagccaatgacaagatgggccaatctgctgac
ggcatggatgcagctgcagagttagtactgcaaggtatgcagaatgcaatgagtcgtggt
atgggtcttctggggatgcacccctcagcttcccttacccaccccctgcaccagcagggc
ctgcctggccagaggatgcctgggctgatgccgctggacctccggcctactatgctccag
ggtgccggggcccggttccccctcctgatgcagcagggcctgtcccaacagagcctcctg
gaagcatccctccatgcccaggcccgcgccagagcggcctcccagatggaacgcttcaac
agggccgaggaggccttcaaccgggggcccaaccccccaaacgaaagcatgtccaaggct
gaggacgagccttcctctggagctgacgatagccagcaggggggggaccaagactaccgc
ttccctccgccccaggagaagcagagcacaggcctactgaggacccctcccctggagcac
agagagtccatgggtggaggagctggtggtggtggtttgggcggaggcagacctgccctg
ctccagaccccagtgagagagccagctagagacagcgtggcagggcggcttcaggccctc
gccggcttcaccccccagacccagagtcgctgggggccactcagaggggactttggtgag
cgtgacatgcggagctctccggccgcgggcttccaggaagcgcgccctggctctaaccaa
gggcagaactttcccaaccgctttgagaaccagaaccgcgctggatcagcaggaggggta
ggaggaggagtatgtactggtggtgttggagggggcccggcgtggagtcgtggtggagtt
gatgctgcagcaccgttcgctgatgctgacatgccccaggacttggatgagtgccggcgt
ccttgggacaggcagcaacgggacagggactttgacttcaggaaggagatgaatggcaac
cggcgtgagagagacagccgtgagaaggagagggaacgcgagagagaaaggggccgtgag
cgtggtaaccgtgaacgagaacaggagcgtgaccgggagagagagcgtgaaaaggagagg
gagaaggatcgggagagggaacgtgagagggaccgtaacaagcgtggagcctggacaccc
cttcttcctctaccacaacccctgctccctactcctaccctgaccccaaccctctccctg
acccaaggcaaacctcaggccctgctgcaactacagtccaagcttcaacctaaacctgga
ctcctaactaaaccgggtctgcttcaaactccaactctcctaactcggtcaacatctcat
gtctcaaccaagtctcttcttcaagccccatcccagtctcttcttcaagccccatcccag
tctcttcttcaagccccatcccagtctcttcttcaagccccatcccagtctcttcttcaa
gccccatcccagtctcttcttcaagccccatcccagtctcttcttcaagccccaacccag
tctccacctctaacctctcaccagtcatcccagtctccacctaaagctccaccccagtcc
acccagtttccaactcaagccaagaatgaagccctccccggtcctgtgccccaggcagag
ttccattcctcaccccagacccagtcctctcctcagaaccagttaccaccccaaaaccag
gcttcccttcaggcccagtcgcggcaccctgcccattcccctttccagacaaagtcccct
ccccagggccagtcatcatcatgtgcacagtcaccaccccaggccttgtccccaccacgg
gcacagtcgccaccccaggtgtccccacaggccccccgcaccccagaggagatcactgac
acccagggggagccagagaaaccccggtgggccaacgagccagagaaacctcaggaagat
cctgaacccatggtagaacctccatctcggtgggtcaatggaacagggtcgaggatggac
actgacacagtggctgagcccaccactaccccgtcccccactcctgcactctcaatgtca
ctggtcctcacacacagccctgtggagccccaatgcctgccggagcccctggaccagcag
catccctcgcagcatgtcgcctcttgctcctccacaaaggatgtagacaatggactgaat
gagccgatggaggaagctgagaaacagccagtggtagagaaaacagacactgaggggaca
atcatcactcagtag
DBGET
integrated database retrieval system
