Salvelinus namaycush (lake trout): 120023325
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Entry
120023325 CDS
T07522
Name
(RefSeq) AT-rich interactive domain-containing protein 1B-like
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120023325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120023325
03021 Transcription machinery [BR:
snh03021
]
120023325
03036 Chromosome and associated proteins [BR:
snh03036
]
120023325
Transcription factors [BR:
snh03000
]
Eukaryotic type
Helix-turn-helix
ARID
120023325
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120023325
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120023325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
120023325
NCBI-ProteinID:
XP_038823270
UniProt:
A0A8U0PEJ7
LinkDB
All DBs
Position
Sna28:31490621..31706243
Genome browser
AA seq
2239 aa
AA seq
DB search
METGLIANHKQKNVSVDPPQHLTPPQQQSQFNPFPQHQQHQIQSNNINNSQATRGESDNQ
HHGGKRGVLASQTEQQMLSKGEGDHTCKPGERMGARYEHANLGPTTDINNQPQSAGGDSA
ISEFNNYYGTSRVGGCYDQHGGQSTGMGMMHSSGPNNMDPVHNSHEGYHNSQYNHYPGYR
QGYGGAGYGMMAPSRQGSNMLIGPGSNTPASHVKTTMGAASSGSGGSVGGFQRFPGHTQH
PSGATPTLNQLLTSPSPMMRGYGSGYHQDYNSPSAQQQAGIGLGKDMTSQYGSTTHGWPG
QQRNHPSMSPGNGGQGISRPQVASVDFMAMKRSHLYGMGNNPYSQQQQGGPYPSQPYGSP
ATHRYPMGMQGRGQAGMGGMQYPQQQVPPQYGQQGMGGYSQQQQGTPPGSYFSPPQQNPT
APTQPPYLPPRAPPQQEAPQESYRDSTRSQQHVPGNSGKANLEDMGLIPQDRPSSLPDLS
GSIDDLPTGTDAGHSSAVSATGSTSSQGEQSNPSQSPFSPHASPHLSGRGSGPSPSPVGS
PVGSNQSRSGSGPISPVSGPTTAQGSQMAPQIPVNMSDVPHSPLTQSPMPQERGFMSNMQ
RNQSGSQFAPPLPQSGRSMSPHPSPGPGPGGQMYPGMGPRPYLQGGSSGPYGPQGSQANQ
YGPQGNYPRPPNYGGTPSANYSGPGPGMTNSLGMNASSPMHGQGPGQPMPMGRSLGAGSR
PYPNMAPSSPSMPQPAGPGMGPPSLGNVNRKAQEAAASVMQAAVNSVEQSRQGSYPGPGI
NQMVPPINQSQGNNSGMGTPQGPPYNMPPSGPMGMAGDGMVTPVGKQKMDGKEESMPTNE
PPRPKDGYSGSQCVSQPTTPGAMPVPSPLSPSPASLSSYHGDDSDSISSPVWPKTPSSPK
PNSSTMTNERITRLYDMGGEPERRVWVDRYLSFMEERGTPVPHLPAVGKKPLDLYRLYMV
VREIGGLAMVNKNKKWRELSTSLSVGTSSSSASCLKKQYIQYLFAYECKVERGEDPPADS
NTGTGGDNRKQAKLQPPSPANSGSLQGPQTPQSSGSSSMAEMSGDLKPPTPASTPQGQGQ
GQGQGQGQVTPIPASRNSVVSVQDPFSEVSDPVFQKRNSLPPGGPGGPYQQGVNMPPDVM
MRMQYEKDPFAGMRKVAGGDSYMPGQMPSGGMQEMYGRPPSGMGQRSQYPYGPGYDRRPD
HVIGMEGSMGTPGSQSNMGPSNSEGSIYSPNRYPSQLRHEGYGQQYPGMSYGMHPSGMYP
QQQGYKRPMEGMYGPPGKRHEGEMYGPPGKRHEGDMYGPPGKRHEGDMYGPPGKRHEGEM
YAMQYGSQQPDMYNQYSTGYSGPERRPMQGQFPYPSPYSRERMQASGQGQHPQHPMGPQM
MAGGPPSNNGVEGPQGPNMWPSRTDMGYPYSNRQGAPSQVPPYGPLGRGEDMEGRPIQDG
QWLGHGGHRQSSYMSGGMTPMSSRQPPSAYQTSPSMANHLPRAPSPGSFQRSMEARMSPN
KAAYMGSMKMPCKPGMPMPGQGSGHPGQVPPNLRRDLNYPLGSVEATMPLLKPRRKMTSK
DTGTPEAWRVMMSLKSGLLGESTWALDTINILLYDDSTVASFTLAQLPGFLELIVEYFRH
CVMEIFGILEEYEIGTIGQKTLLGPEACNQGEELTSEPEMDCEASQPEPEPEQEVERGEV
EKGEVENGEDKPADITEKMTVELMSPPSATEPAPEGMKEESEAEVKVKKEEGEKEQEGEK
EKGKEEGENPTESKKATAESKEDYPNQSEPRPQQASKYDKFPIKILHKEDLIEDMTEQLA
HVTEFTSGLLHWQVGGGDSTAHIQTHFEGRGEQPDRTEGERDECAILNKEQETDSRTEEK
GNRITATIDDILCARLEALSEGHPTHSAPTYPFRLHQGGGHMHITLLEDEPRCLNEAPLS
TASPWQDSLAKRCLCVSNILRSLSFIPGNDSDMSHHPGLVLILGRLLLLHHQHPERKRTS
PSYQREEVQERGLACSKDEWWWDCLTILREDTLVTLANISGQLDLSLYPETICLPILDGL
LHWMVCPSAEAQDPFPSAAPHSPLTPQRLVLECLCKLSIQDNNVDLLLATPPFSRQEKLY
ATLVRYVGQRKNQVYREMAVATLSNLAQGDSTSARAIAVQKSSVGNLMGFLEDGVSMAQY
QQNPHSLLHMAHHPPMEPPSVNMMCRAAKALLAMAKVEENRPEFVLYEGRLLDISISSVL
NPGVASIVCEVLFQFVKKL
NT seq
6720 nt
NT seq
+upstream
nt +downstream
nt
atggagacgggtttgatagcaaaccataaacagaaaaatgtgagtgtagatccccctcag
cacctcacgccgccgcaacagcagtcacaatttaacccgtttcctcagcatcagcagcac
cagatacaaagtaacaacatcaacaacagccaagcgacaaggggagagagtgataatcag
caccacggagggaagaggggtgttttggcgagccagacagagcagcagatgctgagtaaa
ggtgaaggggatcatacctgtaaaccaggggagcgaatgggtgccaggtatgaacatgcc
aacttgggaccaacgaccgacatcaacaaccagccccagagcgcaggaggggacagcgct
atttcagagtttaataactactatggcacttccagagtagggggctgctatgatcaacat
ggcggacaaagcactgggatggggatgatgcactcctcgggacccaacaacatggaccca
gtgcacaactcccacgaaggataccacaacagccagtacaaccactaccctggctaccgg
cagggctacggtggagcgggctacggtatgatggccccatccagacagggcagtaacatg
ctgattggccctggcagcaacactccagctagccatgtcaagactactatgggagctgct
tcctccggttctggtggaagtgttgggggctttcagagattcccaggacatactcagcat
ccctcgggagccaccccaactctaaaccaactgctgacgtctccaagtccaatgatgcga
ggttatggcagtggctatcatcaagactataacagtccctctgcacaacaacaagctggc
atcggcttaggcaaagacatgacttctcagtatggctccacaacccatggctggccaggg
caacagagaaatcacccgtccatgagtcctggaaacggagggcaaggtatcagcagacca
caggtggcttccgtggacttcatggctatgaagcgctcccatctctacgggatgggcaac
aacccctactctcagcagcagcagggcgggccctaccccagccagccatacggatcgccc
gctacacacagatacccaatgggaatgcaggggaggggccaggcgggcatgggcggcatg
cagtaccctcaacagcaggttcccccccagtacggccagcagggtatgggaggatacagc
cagcagcagcagggaacacctccgggatcctacttcagccccccccagcagaaccccacc
gcccccacacagcccccctacctgcctccccgcgccccaccccagcaggaggctccgcag
gagagctacagagacagcaccaggagtcagcagcatgtcccagggaattctgggaaggcc
aaccttgaggacatgggtctgatcccgcaggaccgcccctccagcctcccggacctgtct
ggctccatagacgacctccctacagggacggacgctggtcacagttcagccgtcagtgct
acaggctccaccagtagccagggggagcagagtaacccgtcccagtcacccttctcaccc
cacgcatcaccccacctgtctggccgaggcagcggcccatcgccctctcctgttggctcc
cccgtgggctccaaccaatcacgctccggctctggcccaatctccccagttagcggccca
accacagcacaagggtcccagatggccccccagatccccgtcaacatgtcggatgtccct
cactcccccttgacgcagtcccccatgcctcaggagaggggctttatgtccaacatgcag
agaaaccagtctggctcccagtttgcaccaccactacctcagtcggggcgttccatgtcc
cctcacccctctcctggtcctggtcctggaggacaaatgtacccagggatggggcccagg
ccctacctccagggtggctccagtggcccctacggaccccagggatcccaggcaaaccag
tatggaccccaaggtaactacccacgtccacccaactacggtgggacccccagtgccaac
tacagcggccccggccctggcatgaccaacagcctgggtatgaatgccagcagccccatg
cacggccagggtcccgggcagcccatgcccatgggccgcagtcttggcgcgggcagccga
ccctaccccaacatggcccccagttcccccagtatgccccagccggcaggcccagggatg
ggccctccttcactgggcaacgtcaaccgcaaggcccaggaggcagccgcttccgttatg
caggccgcagtcaactctgtagagcagagcagacagggcagctacccaggccctggcata
aaccagatggtgccccccatcaaccagtcgcaaggcaacaactcaggcatgggcacgcca
cagggtccaccctacaatatgccaccctcagggcccatggggatggctggggatgggatg
gtgactcctgttgggaagcagaaaatggatggcaaggaggagagcatgcccaccaatgaa
cctcccagacccaaggatggctacagtggatcccagtgtgtctcccagcctaccacccct
ggtgccatgcctgtcccctctcccctgtcccccagcccagccagcctgtcctcctaccat
ggggatgacagtgacagcattagcagccccgtctggccaaagactccctccagccctaag
cccaactcgtccaccatgactaacgagcgaatcacacgtctgtatgatatgggtggggag
ccggagaggcgtgtctgggtggaccgctacctgtccttcatggaggagaggggtacacct
gttccccacctccctgccgtgggcaagaagcccctggacctctacagactgtacatggtg
gtcagggagatagggggcctggccatggtgaacaagaacaagaagtggcgagagctgtcc
actagtctgagtgttggtacctccagcagctccgccagctgtctgaagaagcagtacatc
cagtacctgtttgcctatgagtgtaaggtggagcggggagaggacccgccggccgacagc
aacactgggactgggggggacaacaggaagcaggccaagttgcagccgccctctcctgct
aactcagggtccctgcagggcccccagaccccccagtcgtcaggcagcagctccatggca
gagatgtcaggtgacctgaaaccccccaccccagcctcaaccccccagggccagggccag
ggccagggccagggccagggccaggtcacccccatcccagccagcaggaacagtgtggtc
agtgtgcaggacccgttctctgaggtgagcgacccggtcttccagaagcgtaactccctc
cccccggggggccctgggggaccgtaccagcagggggtcaacatgccccctgacgtgatg
atgaggatgcagtatgagaaggaccccttcgctggcatgaggaaagtggcaggaggggat
tcctacatgccaggccagatgcccagcggtggcatgcaggagatgtatggcaggcctcca
tcaggcatgggccagcgttcccagtacccatacggaccgggctacgacaggagaccagac
catgtgatagggatggaggggagcatgggcacccccgggagccagagcaacatgggacct
tccaacagcgagggcagcatatactctcccaacagatacccctcccagcttagacatgag
ggttacgggcagcagtaccctggcatgtcatatggaatgcacccctcagggatgtaccca
caacaacagggttacaagcgccccatggagggtatgtacggccccccaggcaagaggcac
gagggggagatgtacggccccccaggcaagaggcacgagggggacatgtacggcccccca
ggcaagaggcacgagggggacatgtacggccccccaggcaagaggcacgagggggagatg
tacgccatgcagtacggcagccagcagcctgacatgtacaaccagtacagcactggttat
tctggtcctgagaggaggcccatgcagggccagttcccttacccctccccctacagccga
gagcgcatgcaggcctctggccaggggcagcacccccagcaccccatgggtccccagatg
atggccggggggccaccctccaacaacggagtggaaggaccccaggggcccaacatgtgg
ccctccaggacagacatgggttatccctactctaacagacagggggcaccctcccaggta
ccgccatacggtcctttggggagaggagaggatatggagggccgacccatccaagatggt
cagtggctcgggcacggaggccatcgccagtcctcctacatgtcaggtggtatgacccct
atgtcctctcgccagcccccctctgcctaccagacctccccctccatggccaaccacctg
ccccgagcacccagccccggctccttccagcgctccatggaggcacggatgtcccccaac
aaagctgcctatatgggctccatgaagatgccatgcaaaccgggcatgcccatgccaggg
cagggtagtgggcacccaggccaggtcccacctaacctgcggagagacctcaactaccct
ctaggatctgtagaggccaccatgccccttctcaagccccgccgcaaaatgacctcaaag
gacactggaaccccagaggcgtggcgagtgatgatgtctctgaagtcaggtctgctgggt
gagagtacctgggccctggacaccatcaacatcctgctgtatgatgacagcactgtggcc
tccttcaccctcgcacagttgcctggcttcctggagctgatagtggagtacttcagacac
tgtgtgatggagatctttggcatcctggaggagtatgagatagggaccatcggccagaag
accctcctggggcctgaagcctgtaaccagggggaggagctgacctctgaacctgagatg
gactgtgaggccagccaaccagagcctgagcctgagcaggaggtggagaggggggaggta
gagaagggggaagtagaaaatggggaggacaaacctgctgacatcacagagaaaatgaca
gtggaactgatgtctccccccagtgcaacggaaccagcccctgagggaatgaaggaggaa
tctgaagccgaagtgaaggtaaagaaggaagagggggagaaagaacaggagggagagaaa
gaaaaagggaaagaggaaggagaaaatcccaccgagagtaagaaagccacagctgaaagt
aaggaagactatcctaatcagtcagagccaaggccacaacaggccagcaagtacgacaag
tttcccattaagatcctgcacaaagaggacctgattgaggacatgacggagcagctggct
cacgtgacagagttcactagcggactgctccactggcaggtaggcgggggggattccacg
gcccacatccagacccactttgagggcaggggagagcagcctgacaggacggagggagag
cgagacgaatgtgccattctgaataaagagcaggagactgactcaaggacagaggagaag
gggaatcgtatcaccgccaccatcgatgacatactgtgtgcccggctcgaggctctgtca
gagggccaccccacccactctgcccccacctacccattcaggctgcaccagggcggaggc
cacatgcacatcaccttgctggaggacgagccccgctgtttgaacgaggctcccctctcc
acagcttctccttggcaggactccctggccaagcgctgcctctgtgtgtcaaacatcctc
cgcagcctctccttcatccctgggaacgactcagacatgtcccatcacccaggcctggtg
ctgatcctgggcagactgctgctgctccaccaccagcacccagagaggaagaggacgtcc
cctagctaccagagagaggaggtgcaggagcggggcctggcctgcagtaaggatgagtgg
tggtgggactgtctcactatactcagggaggacaccttggtcaccctggctaacatctct
ggccagctggacctttccctctacccagagaccatctgcctgcccatcctggatggccta
ctccactggatggtgtgtccctctgccgaggcccaggaccccttcccctcggctgccccc
cactcccccctaaccccccagagactggtgctggagtgcctgtgcaagctgagcatccag
gacaacaacgtggacctgctgctggccacgccaccgttcagccgccaggagaagctgtat
gccaccctggtgcgctatgtgggtcagcgtaagaaccaggtttaccgcgagatggctgtg
gccaccctctccaacctggcacagggggactccacgtcggcacgcgccatcgcagtacag
aaaagcagcgtgggtaacctgatgggcttcctggaggatggggtgagcatggcccagtac
cagcagaacccccacagcctgctgcacatggcccaccacccccccatggagccccccagt
gttaacatgatgtgtcgggctgcaaaggctctgctggctatggccaaggtagaggagaac
aggccagagtttgtcttgtacgagggcagactcctggacatctccatctcctctgtgctc
aacccgggggtagccagcattgtatgtgaagtactctttcagtttgttaaaaaattatga
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integrated database retrieval system
