Salvelinus namaycush (lake trout): 120023438
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Entry
120023438 CDS
T07522
Name
(RefSeq) syntaxin-binding protein 5-like isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120023438
Membrane trafficking [BR:
snh04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
120023438
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
120023438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WD40_Prp19
ANAPC4_WD40
Beta-prop_HPS5
WD40
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Lgl_C
EIF3I
Beta-prop_EML
WD40_like
KNTC1_N
Synaptobrevin
PEP5_VPS11_N
RAB3GAP2_N
WDR54
Motif
Other DBs
NCBI-GeneID:
120023438
NCBI-ProteinID:
XP_038823385
UniProt:
A0A8U0TPD3
LinkDB
All DBs
Position
Sna28:7811235..7857065
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AA seq
1127 aa
AA seq
DB search
MKKFNIRKVLDGLTASSSSGTASPQPGTNQNDVIQETLQSEHFQLCKTVRHGFPYQPSSM
AFDPVQKILAIGTQSGAVRLFGRAGVECYCQHDSGAAVIQLQFLVNEGALVSALADDSVH
LWNLRQKQPAILHTLKFNRERITFCHLPFQSKWLYIGTEKGNIHIVNVESFTLSGYVIMW
NKAIELSSKSHPGPVVHISDNPMDEGKILIGFECGTVVLWDLKCKKADYRYNHDEAIHSV
AWHHEGKQFTCSHSDGTLTTWNVRVPAKPTITITPHGKQPKDGKKPEPCKPILKVEYKTT
RDGDAFVVMSGGLSYDTGCRRSCLTVMHGKSTAVLEMDYPIVDFLTLCETPYPNDFQEPY
AVVVLLEKDLVVIDLEQIGYPIFENPYPLSIHESPVTCVEYFADCPPELIPALYSVGSRQ
KRQGYSKKEWPISGGNWGQGTLSYPEIIVTGHADGSIKFWDASAIMLQVLYKLKTAKVFE
KALKGGKEEKPSTEIVDEDPFAIQTLSWCPESRMLCVAGVSAHVIIYRFSKQEMTTEVVQ
LLEVRMQGELNDVDSPDPAGDHPPTPSTPVPPSSSSPTQEGEPSEAQPFTSDDRPRDNVP
CLKVRSAPLKQSPGYQVELVIQLVWVSGEPPQQITSLAVSSSDGLVVFGNSSGLAVVDYL
QKSLLLNMSTSELYSPSDPYQRQPRSPRKTRQPSGALSDNSDGNNVSEEKSNKSPTSVKS
KSRRFSKTVANDFAKMSKKISSPTEQKTGLDAKDSLFSRSRSSSVTSIERESREAISSFH
FSESFPRKTDSSPSPSLWLGTTQGTVLVLSLSLPPTGDQRLQQPVGVSSCGTLVRLKGGI
LTMAFLDSLGAVLHPSYEPWSEPNAPDEEKTRRRRPASPPPTQEGQDSQYAVVCSEKQAK
VVGLPSQSCFFKHNITESSFVLRADVVQMAAGLCLACFCANGHIMTLSLPSLRPLLDVNY
LPLTDMRIARTFCFSNLGQALYLTSPTEIQRITYSQETCDNLQEMMGELFTPLETPEAPN
RGFFKGLFGGGAQSLDREDLFGETAAGKASRSLAQHIPGPQGMEGMKGAASGVVGDLARA
RIALDERGQKLGELEDRTAAMMASADSFSKHAHDMMLKYKDKKWYQL
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagttcaatatcagaaaagtgctggacggcttgactgcttcttcttcatctggc
actgcatctccacaaccaggaactaatcaaaacgatgtgatccaagagacgctacaatcg
gagcatttccagctctgcaagactgtgcgccatgggttcccctaccagccctcctccatg
gcctttgaccctgtgcaaaaaattctggccatcgggactcagagcggagctgtgagactt
tttggccgtgctggtgtggagtgttactgtcagcatgacagtggtgcagctgtaatccag
cttcagtttctggtcaacgagggggcgctggtgagtgccttagctgatgacagcgttcac
ctgtggaacctgaggcagaagcagccagctatcctgcacactctcaaattcaatcgggag
aggatcacgttttgtcacctgcccttccagagtaaatggctgtacatcggcacagagaaa
ggaaacatccacatcgtcaacgttgagtccttcacactgtcaggctacgtcattatgtgg
aacaaagccatcgaactgtcctccaagtcacaccctgggcctgtggtccacatcagtgat
aaccccatggatgagggaaagattttgattggatttgaatgtgggaccgtggtgttgtgg
gatctgaaatgcaaaaaagctgactaccgctacaatcatgatgaggccatccactcagta
gcctggcaccatgagggaaaacagttcacctgcagccactcagatggaactctgaccaca
tggaacgtacgtgtccccgccaagcctacaatcaccatcacaccacacggtaagcagccc
aaggatggaaagaagccagaaccatgcaaacctatcctcaaagtggagtataaaacgact
agagatggggacgccttcgtggtcatgtctggaggcctgtcctatgacacggggtgcagg
aggtcctgtctgacggtgatgcatgggaagagtactgccgttctggagatggactatccc
atcgtagacttcctcacactctgcgaaacaccatatcctaatgatttccaggagccttat
gctgtagttgtcctcttggaaaaggatttagttgtcatcgaccttgaacaaattgggtac
ccaatatttgagaacccgtaccctctgtcgatccacgagtctccagtgacgtgcgtggag
tactttgctgactgccctcctgaactcatacctgcactttactctgtgggctcccggcaa
aagagacagggttacagtaagaaggaatggcctataagtggtggtaactggggccaaggc
acactgagctaccctgagatcatcgtcactggacatgctgacggctcaatcaagttttgg
gatgcttctgcaataatgctccaagtactgtacaagctgaagactgccaaggtgtttgag
aaggctctgaagggcggtaaggaggagaagccgagcacagagatagtggatgaggatccc
tttgccatccagactttgtcgtggtgcccagagagcagaatgctgtgtgtggccggagtc
tccgcccacgtcatcatctataggttcagcaaacaggaaatgaccacagaggtggtgcag
ctgttggaggtgcgtatgcagggtgagctgaacgatgtggattctccagacccagcagga
gaccatcctcccaccccctctaccccagtacccccctcctcctccagccccacccaggag
ggagagccctctgaggcccagcccttcacctctgatgaccggcccagagataacgtacca
tgccttaaggtccggagcgcccctttgaagcagtctcctggttaccaggtggagctggtc
attcaactggtctgggttagtggggagccgccgcagcagatcaccagcctggccgtcagc
tcgtcagacggacttgtggtgtttggcaacagcagcggtctggctgtcgtggactacctt
cagaagagcctcctcctgaacatgagcacgtcagaactgtacagtccctcagacccctac
cagagacagcctcggtcgcctcgcaagacacgacagccatctggagctctcagtgataac
agcgatggaaacaacgtttcagaggagaaaagcaacaaatcaccaacgtcagtgaagtcc
aaaagcaggcgcttttccaagacggttgccaatgactttgccaagatgtcaaagaaaatt
agctcacctacagagcaaaagacaggcctggatgccaaagacagtttgttcagccgctcg
aggagctccagtgtgaccagtatagagcgggagtcccgcgaagcgatctcctccttccac
ttcagtgagagtttccccaggaagacagacagcagccccagccccagcctgtggttgggg
actacccagggcactgtcctggtcctctccctcagcctgccacctacaggggaccagagg
ctgcagcaacctgtcggagtctcttcctgtggtactctggttagactaaaaggaggtatc
ctgactatggccttcctggactcccttggggcagtcctacacccttcctacgagccgtgg
tccgagcccaacgctccagacgaggagaagacgaggaggcgcaggccggcctccccaccc
cccacccaggagggtcaggacagccagtacgctgtggtgtgttcagagaaacaggccaag
gtggtgggcctgccctcccagtcctgcttcttcaaacacaacatcacagagagctccttt
gtgctgagagctgatgtggtgcagatggccgctggactctgtctcgcctgcttctgtgct
aatggacacatcatgactctgagtctacccagtctcagaccactcctggatgtgaactac
cttcccctgacagacatgaggatagcccggaccttctgcttctccaacctgggccaggct
ctgtacctcacctcccccactgagatacagaggatcacatacagccaggagacctgcgac
aatctacaggagatgatgggagagctgtttacaccgttagagacacctgaagctcctaat
agaggtttcttcaagggcctgtttgggggaggagctcagtcgctggatagagaagacctg
tttggtgagactgcggcgggtaaggcatctcgtagcctggcgcagcacattcctgggccc
cagggcatggagggtatgaagggagcagcctctggggtggtgggggacctggcccgtgcc
cggatagccctggacgagagggggcagaaactgggcgagctggaggacagaaccgcagcc
atgatggccagcgctgactccttctctaaacacgctcatgatatgatgctgaagtacaaa
gataagaagtggtaccagctctga
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