Salvelinus namaycush (lake trout): 120023522
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Entry
120023522 CDS
T07522
Name
(RefSeq) transforming acidic coiled-coil-containing protein 3-like isoform X1
KO
K14283
transforming acidic coiled-coil-containing protein 3
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120023522
03036 Chromosome and associated proteins [BR:
snh03036
]
120023522
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120023522
mRNA cycle factors
P-body specific factors
120023522
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Sister chromatid separation proteins
TACC proteins
120023522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TACC_C
Lzipper-MIP1
DUF5063
DUF2935
TetR_C_46
ATG17_like
Motif
Other DBs
NCBI-GeneID:
120023522
NCBI-ProteinID:
XP_038823475
UniProt:
A0A8U0TPG9
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Position
Sna28:23547577..23557189
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AA seq
1119 aa
AA seq
DB search
MSSTAVNDENRGVCPGRKQSNSETICDIFSFDQPTGRPSILRQSQAENLSNKTIAKGGKV
CFQTPRRDPLTKRIVSPTKSLNMESLDDCSKALETLQFTSPEEVVPIEINGLVDVAKSDF
TNVLSYPDDDMPIQSKGGCQLYFDNLDAINLFQGSTKMVLSPARPSELAETPKAEEQRER
NVIEAVSDRNEKALDDTLPFMPSVENFLADFSADMCSTDSSVITMMKDPADELSNAGEEE
TVPSVNLDPDQAVAIISTAEETPLPPKGTYEFDFDNLDSVNPFQTGGSKLQNSPVLGRKR
PCDDSQKVEVEEPVVKEMEPAAMLEVVQPVLEAPVQPEMKPIAPKTTKPAEDAVANTSTA
EETPLPPKGTYEFDFDNLDSVNPFQTGGSKLQNSPVLGRKRPCDDPQKVEVEEPVVKEME
PAAMLEVVQPVLEAPVQPEMKPIAPKTTKPAEDAVANTSTAEETPLPPKGTYEFDFDNLD
SVNPFQTGGSKLQNSPVLGRKRPCDDPQKVEVEEPAVKEMEPAAMLEVVQPVLEAPVQPE
MKPMAPLSTAPKETRKPAEESITQPSAAPSKDGAVKLEFNFDDGEVKCKPPPKKFGKRPV
LKPTWKKAVPTEKKEPAQSKESPVKPLVNTDYEIPLPKGKYNFDLDKFDPNVNPFGTNVK
MTESTVCKVKSSPDAKAPTSVRVAVSPEKVTEPVQQETAPSLCVSITGYEPDRSAVKGID
NIPQNPKLQMDSCEVQDPSSGKEQEPPTKPDQPSLRTPEPLELCQFEQTPQNGMSEFNED
FVPGNTFMASDFDRQMDYLEQFGSSTFKESALRKQSLYLKFDPLMRESPKKSGVPAGLNN
LPRPAPFASRVETQKTGDEEVNGLKSVNPKLLYDLPPVQVVGPRTLVANSPVLENLVPTF
PQPANPDDNIIEVLKYSQQDMNAAIAKIQKQAKENADEWKSKHDTLSQDNHEMGKIMSAF
EATIAQILADKQRETEKAQADITKVLQEKEQLSQDLNAMERSFSDLFKRLDKYKEVIEGY
IKNEEMLKKCAQDYLARIKEEEQRYQTLKAHAEHKISLANGEIAEVRSKLKSEVAALQAQ
LRREQLKAQSLEKSLDQKVKETEELTNLCDELIAKVQKG
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagttctactgctgtaaacgatgagaatcgtggggtctgccctggaagaaagcagagc
aattcagagacaatttgtgacatcttttcttttgatcagccaactgggaggccctccatt
cttcgccagtctcaggcagagaacctgtcaaacaaaactatagcaaagggagggaaggtt
tgttttcagactccaagaagagaccctctcactaagagaatagtatcaccaacaaagtcc
cttaatatggaaagcttggatgactgtagtaaagccctggagactttgcagtttacatca
cccgaagaggtggtacctatagaaatcaatgggcttgttgatgtagcaaaatcagacttc
acaaatgtgttgtcctatcctgatgatgatatgccaattcagagtaaaggaggttgtcag
ctgtattttgacaaccttgatgccatcaatctcttccaagggtctactaaaatggtcctc
tctccagcaaggcccagtgagctagctgaaactcccaaggctgaagaacagcgtgaacgt
aatgtcattgaagcagtttctgacaggaatgaaaaggcactggatgatacactcccgttc
atgccatcagtggaaaattttcttgctgacttctcagccgatatgtgctcaacagatagc
agtgtgattaccatgatgaaggacccagccgatgagttatccaacgctggtgaggaagaa
actgtaccatcagttaaccttgacccagatcaagctgtggctatcatctctacagctgag
gagactcctctgccgccaaaaggtacatacgaatttgattttgacaaccttgattcagtc
aaccctttccaaacgggaggctccaaattgcagaattcccctgtgcttggaaggaagcgg
ccatgcgatgactctcaaaaggtggaagttgaagagcctgtagtaaaggaaatggaacca
gcagccatgcttgaggtggttcagcctgtcctagaggcacctgtccagccagagatgaaa
cctattgcaccgaagactaccaagccagctgaagacgctgtggccaacacctctacagct
gaggagactcctctgccgccaaaaggtacatacgaatttgattttgacaaccttgattca
gtcaaccctttccaaacgggaggctccaaattgcagaattcccctgtgcttggaaggaag
cggccatgcgatgaccctcaaaaggtggaagttgaagagcctgtagtaaaggaaatggaa
ccagcagccatgcttgaggtggttcagcctgtcctagaggcacctgtccagccagagatg
aaacctattgcaccgaagactaccaagccagctgaagacgctgtggccaacacctctaca
gctgaggagactcctctgccgccaaaaggtacatacgaatttgattttgacaaccttgac
tcagtcaaccctttccaaacgggaggctccaaattgcagaattcccctgtgcttggaagg
aagcggccatgcgatgaccctcaaaaggtggaagttgaagagcctgcagtaaaggaaatg
gaaccagcagccatgcttgaggtggttcagcctgtcctagaggcacctgtccagccagag
atgaaacctatggcaccattgtcaactgctcccaaagagaccaggaagccagctgaagaa
tccataactcagcccagtgcagccccttccaaggatggtgcagtgaaacttgagttcaat
tttgatgatggcgaggtcaagtgtaagcctcctcccaaaaagtttggcaaaaggcctgtt
ttgaagccgacatggaaaaaggctgtacctacagaaaaaaaagaacctgctcaatccaag
gaatcgccagtgaagccattggtcaatactgattatgaaattcctcttcccaagggcaag
tacaactttgacttggataaatttgacccaaatgtcaatccatttggtacaaatgtaaaa
atgactgaatctacagtctgtaaggtgaaatccagtccagatgccaaggcaccaacctca
gtcagggtggctgtctcccctgagaaagtgacagagcctgttcagcaagaaactgcccca
tcactatgtgtttctattactggatatgaacctgatcgttctgctgtaaaaggaattgac
aacattccacagaatccgaagcttcagatggactcttgtgaagttcaggatccttcctct
ggaaaagagcaggaacctccaactaaacctgaccaaccttcgctaagaactccagaaccc
ttggaactctgccaatttgagcagaccccacagaatggcatgtcagaatttaatgaggac
tttgttcctggaaacacattcatggcgagtgactttgacagacagatggactacctggag
cagtttgggtccagcacttttaaggagtcggcactgagaaaacaatcactgtacctcaaa
tttgacccactaatgcgggagagccccaagaagtctggagtccctgcaggactcaacaac
ctcccacgacctgctccctttgcttcacgtgtggagacccagaagactggagacgaggag
gtgaatggactaaaatctgtcaaccctaaactgctttatgacctaccacctgttcaagtt
gttggtcctcggactcttgtggcgaattcccctgtgcttgagaatctggtccctactttc
ccccaaccagccaaccctgacgataacatcatagaggtgctgaaatacagtcagcaagac
atgaatgctgccattgccaagatccagaaacaagcaaaggagaatgcggatgaatggaaa
tcgaagcatgacacgctatctcaggataatcatgaaatggggaaaatcatgtcagcattt
gaagccacaattgctcagatattggctgataaacagagggagacggagaaggcccaggct
gacatcactaaagtcctgcaggagaaggaacagttatcacaggacctaaatgccatggag
cggtccttctcagatctcttcaagagactagacaaatacaaagaggtcatcgagggttac
ataaagaatgaagagatgctgaagaaatgtgctcaagattacctggctaggatcaaggag
gaggagcagcgctaccagaccctgaaagctcatgcagagcataaaattagcctggcgaat
ggagagattgcagaggtgcgctccaaactaaagtctgaggtcgctgcacttcaggcccag
ctgcgcagggagcagctaaaggcccagtcactggagaagagccttgaccagaaagtaaaa
gagactgaagaactcaccaacctttgcgatgaactaatagctaaagtccagaagggctga
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