Salvelinus namaycush (lake trout): 120023593
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Entry
120023593 CDS
T07522
Symbol
rpap1
Name
(RefSeq) RNA polymerase II-associated protein 1 isoform X1
KO
K20826
RNA polymerase II-associated protein 1
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120023593 (rpap1)
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
120023593 (rpap1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RPAP1_C
RPAP1_N
CEP104-like_TOG
Motif
Other DBs
NCBI-GeneID:
120023593
NCBI-ProteinID:
XP_038823557
UniProt:
A0A8U0PE99
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Position
Sna28:complement(33655240..33667045)
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AA seq
1401 aa
AA seq
DB search
MIRRPKPTDSEADLLQEQERFLASGTPSTVNVVRRPDKRSGDSKGAQGDQRDVVTIQDLP
DELPTLTPAPPKKSRLKVDRVRFEDEDPEERLDRHDTHISAVLSKIIERDTSTTPVSLPA
FTSLAFPKVLHRPEMESMVPAAGEKRSIFARQIAAQRIKEGNTPLYFAPASRGQTSGPKV
LNLSPESTMEMDQPPSRLDRFSAMAGPRLVSGQGLGGSDSTVEMLKIQQENQAKLQAMSK
GEILEEQKRLLGQLDPRLVDFVRSRKAQGALASAPQPSNSQDERRREQRLQETVMMPDQN
PREVEMEREEDEDEPTPQPPMKEEDLPVKPQKEWVHMDKLEPEKLEWIRDLPAPRRKGTK
QAMQARFDFAGTLIPPTEDLPTHLGLHHHGEEPELAGYSLQELFLLSRSQVIQQRSLALN
TLAHILTKARAGEFAAALRGSVVSTLLDAGLLFLLRFSLDDNVEGVMSAAVHALRALLVS
SDDEDCLDSTLSWFRGLASFPLLPTAQEEEDEEDEGLPEVMRETAQEKEEKKTDHDVARN
DVVKGLLRMKLLPRLRYILEVIRPSPRVVQDVLGVLIRIARHSSSAATQVLDCPRLMETV
MSEFLPCSWTVPASPTPQSAYGLPVANAMKLLRVLATTGRHACARLLNSLGARERLSRVL
APEPSELLLEPEEALRVSTEAYRLWAVAASYGQACNLYTDLYPILVRVLQSAHRPWRPSD
PLLPLELHRLQALLTLLTHVTHTAGCHQELQAGLVSSQGAECPPPPPVTWGHVTGLQPTV
LGLLKGCVRTLGEPVQRESTLRLVPAYLVYMGAFYSQLSIQSSFNPVECLQELEMLTSEV
LLPLLSHEAVHSLINNLKCSSAVCNPQSCCPGPETIPSLPGLHCAGWTSAGGLPGPNSPF
PLITSLCYLLDTLTSIHRGLVRKFSSLLLFEAVLGYLRGCGQAKPTLSHWVLRHEHHLLY
LLLRLACRLVPTDPEVAKHAALFHHVSLVMLPWLLPGSEYLAHELMATMVFNKDFIPEGQ
IGGPEAAEMSELRLQECSAPPLQTLGPLLREACVQLPSVRGCYLSHLAHMEPSVLSSRDF
HLGRTPWLNTQLLPELSGPSLPSDWPFLPLVSLYEQAGAPDGGGLQVESLPAGAVQSVTH
CLQWLLLLEVWREDALRVVLPVAKLARLACIFLCSSDLFMERPVQRLTWALFRLLTRPSQ
LEALDLNSPPTGLASFNDLYSALVGQFEAVSFGDPLFGCVILLPLQRRFSVTMRLTLFGE
HVGLLRSLGVTLEQLAVPMERFTSPPEDSLPLLRLYFRALVTGTLRLCWCPVLYVVALSH
LNTFIFSQDAASQQVETARRSLLRKTHYLTDEVLRSHLLLFRLPQKDAELGFNTYDQLPP
IRQRRLESVLGTQGMSDSKGE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgatacggcgtcccaagcccactgactcggaggctgacctcctacaagagcaggagagg
tttcttgcctcggggaccccatccactgtcaatgtggtccgacggccagacaagagatca
ggagactccaagggggctcaaggagatcagagagatgtggtcacaatccaagatcttcca
gatgagctccccactctgactcctgcacctcccaaaaagtctcgcctcaaagtcgatcgt
gttcgtttcgaggatgaggacccagaggagaggttggacagacatgacacgcacatcagt
gctgttctctctaagatcattgaaagggacactagtactacaccagtgtccttaccagca
ttcacaagccttgcttttcctaaagtattacaccggcctgagatggagagcatggttcca
gctgctggtgaaaagaggagcatttttgcccgacagattgcagcacagagaataaaagag
ggaaatacccctttatactttgcaccagcatccaggggtcaaacatctggacccaaggtg
ctgaacctctctccagagtccaccatggagatggatcaacctccctctagacttgacaga
ttcagtgcaatggcaggccccaggctggtgtctggccagggacttggtgggtcagacagt
acagtagaaatgctgaagatccaacaggagaaccaggccaaactacaggccatgtctaag
ggcgaaatcctggaggagcagaaaaggctgctgggtcagctagatcccagacttgttgac
tttgtaaggtctcgtaaggcacagggagccctagcctctgccccacagccttccaactcc
caggatgagagacgcagggaacagcgtctacaagaaaccgtcatgatgccagatcagaat
cctcgggaggtagagatggagagagaggaagatgaggacgaaccgaccccccaaccgcca
atgaaagaggaggacctgccagtcaagcctcagaaggagtgggtgcacatggacaagctg
gagccagagaagctggaatggatcagggacctgcctgcccccagacggaaaggaaccaag
caggccatgcaggctcgctttgactttgccggaaccttgatcccgcctacagaggacctg
cccacccaccttggtcttcaccaccacggagaggagcctgagctggctggttactccctg
caggagctcttccttctctctcgtagtcaggtgatccagcagcggagcctggcactcaac
actctggcccacatcctcaccaaggcgcgggctggcgagtttgcagccgctctcaggggc
agtgtggtgtccactctgctggatgctggccttctcttcctgctgcgcttctcactggac
gataatgtggagggagtgatgtccgccgccgtgcacgcactccgagccctcctggtgtcc
tcagacgacgaggattgtctggacagcactctctcatggttccgtgggctggcctctttt
cctctactgcccactgctcaggaagaggaggatgaggaagacgaggggctgcctgaggtc
atgagagagacggctcaagagaaggaagagaagaagactgatcatgacgtggccaggaat
gatgtcgttaagggtttactgaggatgaagctgcttcctaggctccgctacatcctcgag
gtgatccgcccgtcacccagggtggtccaggacgtgctgggagtcctgatccgaatcgcc
agacactcctcctctgcagccactcaggtcttggactgccctcgtctgatggagactgtt
atgtcagagttcttgccctgctcctggacagtgcccgcctcacccacgccccagtctgca
tacggactgcccgtggccaatgccatgaagctgctacgcgtcctggccaccactggcagg
cacgcctgtgccaggctgctgaactctctcggtgcgcgggagcgtctgtctcgtgtgctt
gccccagagcccagcgagctgctgctggagccagaggaggccttgagggtcagcactgag
gcctaccggctgtgggccgttgcagccagctacggacaggcctgtaacctgtacacggac
ctgtaccccatcctggtgagagtgttgcagtctgcccaccggccctggcgcccctcagac
cccctgttgcccctggagctccacaggctccaggccctcctcactctgctcacacacgtc
acacacaccgctggctgccatcaggagctgcaggctggcctggtcagttcccagggggcc
gagtgtcctcccccacctccggtgacgtggggtcatgtgacaggtctgcagcccacagtg
ctggggctgctgaagggctgtgtgagaaccctgggggagccagtccagagggagagcacc
ctgagactggtgccggcctaccttgtctacatgggggccttctactcccagctctccatc
cagagctcgttcaatccagtggagtgtctgcaggagctggagatgctgacctcagaggtt
cttctccctctgctgtcccatgaggctgttcacagcctgattaacaacctcaagtgtagt
tcggcagtgtgtaaccctcagtcctgctgccctggccctgagaccatccccagtctgcct
ggtctgcactgcgccgggtggacgtctgctgggggtctgcctggacccaactcccccttc
cccctcattacctccctgtgctacctcctggacaccctcaccagcatccacagaggcctg
gtccgcaaattcagctccctccttctctttgaggctgtgctaggatacctgcgtggctgt
ggccaagccaagcccaccctgtctcactgggtcctgcgtcatgaacaccacctgctctac
ctgctgctgaggctggcctgtagactggttccaactgacccagaggtggccaagcatgct
gccctgtttcaccacgtgtctctggtaatgcttccctggctattacctggcagtgaatac
ctggcccatgaactcatggccaccatggtcttcaacaaagacttcataccagagggtcag
attggagggcccgaggctgcagagatgtctgagctgcggctccaggagtgctccgcccct
cccctccagaccctgggtcctctgctgagggaagcctgtgtccagctgccctctgtccgg
ggctgctacctctcccacctggcccacatggagccctctgtcctctcctccagggacttc
cacttgggcagaacgccctggctcaacacccagctcctcccagaactttctggaccctcc
ctcccctccgattggcccttcctgccactcgtcagcctgtacgagcaggcgggtgcaccg
gacggagggggcctgcaggtggagtcgctccctgcgggggcagtgcagtcggtcacacac
tgcctgcagtggctgctgctgctggaggtctggagggaggatgccctcagggtggtgctg
cctgtagccaaactggcccgtctggcttgtatcttcctgtgctccagtgatcttttcatg
gagaggcctgtccagaggctgacctgggctctcttcaggctgctcaccaggccatctcag
ctggaggctctggacctcaactcccctcctacaggcctggcctccttcaatgacctctat
tctgccctggtgggacagtttgaggcggtgtcattcggggaccccctgtttggctgcgtc
atcctcctgcctctgcagaggcgcttcagtgtcaccatgaggctgactctgtttggggag
cacgtgggcctgctgcgctccctaggggtaacactggaacagctggccgtccctatggag
aggtttacgtcacccccggaggactctctccctctgctgcgcctctacttccgggcgctg
gtgacagggacactgaggctgtgctggtgtcctgtgctctacgtggtggctctgtcccac
cttaacaccttcatcttctcccaggacgcagcgtcacagcaggtggaaacagcccgtcgc
agcctcctgaggaagactcactacctgactgatgaggtgttgaggagccacctgctgctg
tttaggctgccccagaaagacgctgagctgggcttcaacacttacgaccagctgcctccc
atccggcaacgcaggctggagagtgttctggggacccaggggatgagcgatagcaagggg
gaatga
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