Salvelinus namaycush (lake trout): 120023846
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Entry
120023846 CDS
T07522
Symbol
hif1aa
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha a
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04137
Mitophagy - animal
snh04140
Autophagy - animal
snh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120023846 (hif1aa)
04137 Mitophagy - animal
120023846 (hif1aa)
04148 Efferocytosis
120023846 (hif1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120023846 (hif1aa)
Transcription factors [BR:
snh03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
120023846 (hif1aa)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
HIF-1a_CTAD
PAS_11
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
120023846
NCBI-ProteinID:
XP_038823891
UniProt:
A0A8U0TQB7
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Position
Sna28:complement(22999680..23053828)
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AA seq
759 aa
AA seq
DB search
MNTVVPEKKSRVSSERRKEKSRDAARYRRGKESEVLYELAQELPLPHSVTSNLDKASIMR
LAISYLHMRNLLSTDDKAVEEEQEESEMDSQLNGSYLKALEGFLMVLSEDGDMIYLSENV
NKCLGLAQFDLTGLSVFEYTHPCDHEELREILVHRTGTSKKSKGPNTERSFFLRMKCTLT
SRGRTVNVKSATWKVLHCSGHVRVHEAPAEQSPCGHKEPPVSYLVLVCDPIPHPSNIEAP
LDTKTFLSRHTLDMKFTYCDERITELMGYDPEDLLNRSVYEYYHALDSDHLTKTHHNLFV
KGQVSTGQYRMLAKIGGFVWVETQATVIYNSKNSQPQCVVSVNFVLSGIEEEKMVLSLEQ
TEDMRSVKKELVEEEEEDEGSEAKVSPVLLKEEKVDVIKLFIQAMEAQPLASLYDRLKEK
PEALTLLAPAAGDTIISLDFSSPDSDILLKEVPLYNDVMLPSTSDKLALPHSMLPPSEQP
LIPSASVKTKAGPDSFSTPGSHNSTEADSPLNFCFPMDSDISAALKLDLVERLFAIDTKP
KTPFTSQGMEDLDLEMLAPYIPMDDDFQLRTLSPEEPPSCGPAQPLESSPLCSPLHLTQD
VHSYTDSPFSAPSSRTASPAPELAASPCPASLLTMRAPLMDREISLRTLATQNSQLKRKL
SLSQAVGIVHRALLQDPPGPGKKLKVSELGSSEAPSNRTVLLLPTDLASCLLGISSEGSG
SPFTLPQLTRYDCEVNAPVVGRQHLLQGEDLLCALDQVN
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagttgtcccagaaaagaaaagcagggtgagctcggagcggaggaaggagaag
tcccgggatgcagcgcgataccggagggggaaggagtctgaggtgttatatgagctggcc
caggagctgcccctgccccacagtgtcacctccaacctagacaaggcttctatcatgaga
ctggccatcagctacctgcacatgaggaatcttctgagcacagatgataaggcagtagag
gaggagcaggaggagagtgagatggactcccagctgaatggctcctatctgaaggctctg
gagggcttcctcatggtgctgtctgaagacggggacatgatctatctctctgagaatgtc
aacaagtgcttgggtctggcacagtttgacctgacaggacttagtgtgtttgagtacaca
cacccctgtgaccacgaggagctaagggagatcctcgtacacagaacagggacctctaaa
aagtccaagggaccaaacacagagcgcagcttcttcctgcggatgaaatgtaccctcacc
agcagggggcgcactgtcaatgtcaaatcagccacctggaaggttctccactgctcaggc
catgtgcgagtccatgaagccccagctgagcagagcccctgtgggcacaaggagccgccc
gtctcctacctggtgctggtctgtgaccccatcccccacccctccaacatcgaggcgccg
ttggacaccaagaccttcctcagccgccacacactggacatgaagttcacctattgtgac
gagaggatcactgagctgatgggctatgatccagaggacctgttaaatcgctctgtgtat
gagtactaccatgccttggactcagaccacctcactaagacccatcacaacttgtttgtt
aagggccaggtgagcacaggccagtaccgcatgctggctaagataggtggctttgtgtgg
gtggagactcaggccactgttatctacaacagcaagaactcccagccccagtgtgttgtc
tctgtcaactttgtgctcagtggcattgaggaggagaagatggtgctgtctctggagcag
actgaggacatgaggtctgtaaagaaggagctcgtggaggaggaagaagaggatgagggc
tcagaggcaaaggtgtcccctgtgctcctgaaggaggagaaggtggatgtgattaagctg
ttcatccaggcaatggaggcccagccgctggccagcctgtacgacagactgaaggagaaa
ccagaggccctcacccttctggccccggccgcaggagacaccatcatctccctggacttc
agcagccccgattctgacatcctgctgaaggaggtgcctctctacaacgatgtgatgctg
ccctccaccagtgacaagctggccctgcctcactctatgctgccccccagtgagcagccc
ctgatccccagcgcctcagtgaagaccaaggcaggtccagactccttcagcaccccaggc
agccacaactcaactgaggctgacagcccgctgaacttctgttttccaatggactctgac
atcagtgctgcgcttaaactggacctggtggaaagactgtttgccatcgacacaaagccc
aagacgcctttcacctcacagggcatggaggacctggacctggagatgttggccccatac
atccccatggatgatgacttccagctgcgcaccctgtctccagaggagcccccgtcgtgt
ggcccagcccaacccctggagagctctcctctgtgctctcctctgcacctcacccaggat
gtccacagctacactgattccccctttagtgccccaagcagccggacagcttccccagcc
ccggagctggcagctagcccttgccctgcctccttactcaccatgagggcgcctctgatg
gacagagagatctccctcaggacactggccacccagaactcacagctcaagagaaagttg
tctctgtctcaggctgtcggaatagtacatagggcattgctccaggaccctcctgggcca
ggtaaaaagctcaaggtgtctgagctgggcagctctgaggctccctccaacaggaccgta
ctgctcctacctacagacctggcaagctgcctgcttggcatctcctcggagggcagcggc
tcgcccttcacccttccacagctgacccggtatgactgtgaggttaatgcccccgtggtg
ggtcgccagcacctgctgcagggtgaggatctgctgtgtgccctggaccaagtcaactga
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