Salvelinus namaycush (lake trout): 120023910
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Entry
120023910 CDS
T07522
Name
(RefSeq) AT-rich interactive domain-containing protein 1B-like isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120023910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120023910
03021 Transcription machinery [BR:
snh03021
]
120023910
03036 Chromosome and associated proteins [BR:
snh03036
]
120023910
Transcription factors [BR:
snh03000
]
Eukaryotic type
Helix-turn-helix
ARID
120023910
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120023910
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120023910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
120023910
NCBI-ProteinID:
XP_038823938
UniProt:
A0A8U0TQ62
LinkDB
All DBs
Position
Sna29:27631806..27718757
Genome browser
AA seq
2168 aa
AA seq
DB search
MAAQVATAPTSTGKKRSSLTSSVSQEFKSAKSGVVGGTVVGVGNGTIVHAINVERNHHEL
NPNRVRVFPVNNNSSQLEKKSADSRSESFSTSNCSMSSGSMETGTLVSHKVKNVGVGDPP
PSHHHTPPQQQPFNQFIQHQQRQIHNSQQSIHGESGNRQHGGKENVVLGNQVELHQQQQM
LNKSEEEDQPGKTEDRINSRYDHASLGPTNNINPSQSGNSSVSELNNSYYGKGRGGPCFD
QHGGQQSPGSGIMHSVQQNNMDQLQQNSHEGYQNNPYNHYPNYRPGYGNSGYGMMSPSRQ
GNNMMGPVSNTAAANHSRAAMAAASSGGANIGGFHRFPGQSQQHPSGATPTLNQLLTSPS
PMMRGYGSGYQDYTNPSAQQQQSSMGLTKDLSSQYGSTTHSWGGQERNHPAMSPGNNGQG
SGRSQVPPIDAMAMKRSQLYGMGNNPYSQQQQGGGGFYPGQPYRSPSPHRYPMGMPGRGQ
MGMSGMQYPQQQQQMAAQYRQQQGGMGGYCQPQGQPPYSSPPQQQPAAPTQPPYMQPRPL
PQQEVSQEGYVNRGQSAMTPGKPNHEEMGLSQQDRPSSLPDLSGSIDDLPTGTEVAISSA
VSASGSTSSQGEQSNPAQSPFSPHMSPRLRSGPSPSPVGSPVGSSQSRSGPISPASVPGT
QMAPQTPGNMSDVGSHSTLSQSPMSQERGFPPAMQRNTTVPQQSGQGPAMSPHSSPGGTM
LPQSSYHQLQGGPGPSYGPQTGQYGPQGNYPRPPNYGGTPSANYSGPGPGMSNSLGMNAS
SPMHGQGPGQPCGSMPAGRGLGPGASGRPYLGANTNTMAPTSPSMPQPAGQGQGMRPPLP
SVNQEAGLCPGTNAMQGPNAGPNPSAQGRQGMTPMPHHPGMSPRGMASSPGGPYSQQPGA
NTSGRMTPQGPQPLYNSPSGPVHMGGEGMVCPTDPKQRPPEQYRESNTPGPATEPPPKPK
KTSPATMTNEKIRILYEMGVEPERRVWVDRYLAFMEERGTPVPMLPAVGRKPLDLCRLYL
CVREIGGLAMVNKSKKWRELSTHLNVGTSSSSASSLKKQYIQYLFAYECRVERGEEPPLE
IPGETKKQPKIQPPSPANSGSLQGPHTPQSTGSSSMTEMSEAMKLPTPATTPHGHMTPQP
GNRNSVGIRVHDPFSEVSDPAFHKRGPMPSGAPYQQVGGSADPSMRMQYDANKDPYEGPR
KGPGGSEPYRPGQMPSGAMQDMYPRGPPSGAMPGMGMGPGPRSQYPYRPGYDRRPDHVMG
SEGGVPPPGGQNNMVPSSGDPSMYSANRYPHQRPHGHESYGQQYPHGPMPYGSHQSGMYP
QQGYKRPVGQEGMYGPPAKRHEGEAYDMQQYGGQQPDMHRQYGGGYMGPEHMPMQGQYPY
PYSRDRMGAIQGPQQHGMMSGGPPFPSGASAEGPQANMWHPRTDMGYPGRQGQGPGDDPE
GRTLQDGQWPSGHPGQRQSPYPSSSMPPMASRQPLSSYQSNPAMANHIARAPSPFARPMG
GPGPLSPNNGGHYMASLKKAGMPGFMPGSYSGGMSGQGILPLHRDISFPMGSVEATLPKL
KVRRRLTSKETGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVSSFTLSQLPGFL
ELIVEYFRRSLISIFGILDEYEVGTEGQKVLLGPITDQEEELTVAELDSQLDEEQRDSGP
EKTTANGSTEEKEEPVEVTLKETVEGEEKEGAATEQSQPPEPRPKQASKYDKLPVKVEED
QVEEDQELSLPRGFTSGLLHWKAGGGDSTAHIQTHFERRGEETNSKPTEREDKVEEERKA
VVEKGMTETATMDDMLSAWPGSLSERNGLPGMQTQSPIFTLLEDEPRCWDEAPLSTAEPW
QDALARRCVCISNIVRGLSFIPGNDNDMSCHPGLVLILGRLVLLHHLHPQRRRMPPSYQR
KEEQGRACSKDQWWWDCLSALRENTLVTLANISGQLDLSLYPESICLPILDGLLHWMVCP
SAEAQDPFTTAGCSSSLTPQRLVLECLCKLSIQDNNVDLLLATPPFSRQEKLYATLVHHV
GERKSQVCREMAVAVLSNLAQGDPTAARAIALQKGSVGILIGFLEDCVAMCQHQQGPHSL
LHPAAHPQPPSVNMMCRAAKALLAMAKENRTELVLYESRLLDISLSSVLSSAVAAIMCEV
LFKIGRSS
NT seq
6507 nt
NT seq
+upstream
nt +downstream
nt
atggccgcacaagtggcaacagccccaacatcaactggtaagaaaaggtcgagtttaact
agcagcgtgagtcaagagtttaaatctgctaaatctggagtagttggtggaactgtagtt
ggggtaggaaacgggactatcgttcatgctattaatgtagaacgcaatcaccatgaattg
aacccaaacagagttcgagtttttcctgtaaacaacaattcgagtcaacttgagaagaaa
agtgcagattctagatcggagtctttttcgacttcaaattgtagcatgagttcgggaagc
atggagacgggaacgcttgtcagtcataaagtgaaaaatgttggtgtcggagatcctcct
ccatcgcaccaccacacacctccacagcaacagccattcaatcaattcattcagcaccaa
caacgccaaattcacaacagccagcagtcgatacatggagaaagtggaaaccgccaacat
ggaggaaaagagaacgttgttttagggaatcaagtggaactccatcagcagcaacaaatg
ctaaataaaagtgaggaggaggaccaaccgggcaaaacggaggaccgtattaacagcagg
tacgaccatgccagtttgggaccaactaataacatcaacccgtcccaaagtgggaacagc
tcagtttcggagttaaataatagttattatggaaagggaagaggagggccttgctttgat
caacatggcggacaacaaagcccagggtctgggataatgcattcggtacaacagaacaat
atggatcaacttcaacaaaactcccacgaaggataccaaaacaacccgtacaatcactac
ccgaactaccgacctggctacggtaacagtggatatggaatgatgagtccctctcggcaa
gggaacaacatgatgggcccagtcagcaacacggctgctgctaatcatagcagagctgcc
atggctgctgcctcttctggtggtgcgaatattggagggtttcacagatttccagggcaa
agtcagcagcatccgtcgggggctaccccgactctaaaccagttactgacatccccgagc
cctatgatgcggggctatggcagtggctatcaagattacactaatccttctgctcaacaa
caacaatcaagcatggggctgactaaagacttgagctcccaatacggttcaacaactcat
agttggggaggacaagaaagaaatcaccctgccatgagccctggaaacaacggacaagga
agcggcagatcacaggtgccaccaatagatgccatggcgatgaagcgctctcagctctac
ggcatgggtaacaacccttactcccagcaacagcagggcgggggtggcttctaccccggc
caaccatacagatcaccttctcctcaccgctacccaatgggaatgcctgggaggggtcag
atgggcatgagtggaatgcagtatcctcaacagcagcagcagatggcagctcagtatagg
cagcagcaggggggcatgggtgggtactgccagccacaaggccagcccccgtactccagc
cctccccagcagcagcctgcagcccccacacagcccccctacatgcagccacgtccactg
ccacagcaggaggtgtcacaggagggctatgtcaataggggccaatctgctatgacccct
gggaagcccaaccatgaggagatgggcctcagccagcaggacagaccctccagtctacct
gacctgtctgggtctatagatgaccttcccacgggcacagaggtggctatcagctcagcg
gtcagtgcttcggggtccaccagcagccagggcgagcagagtaacccggcccagtcgccc
ttctcaccccacatgtcccctcgcctgcgtagcggcccctccccctcccccgtgggatca
cccgtgggttccagccaatcgcgctccggaccaatctcccccgccagcgtcccaggcacc
cagatggccccacagacccctgggaacatgtctgatgtgggttcccattccaccctgagc
cagtcccccatgtctcaggagagagggttcccacctgccatgcagcggaacaccacagtc
ccccagcagtcgggtcagggacctgccatgtcccctcactcgtcccccgggggcaccatg
ctcccccagagctcctaccaccagctgcaggggggccccggcccctcgtacggaccccag
accggccagtacggcccccaaggtaactaccccaggccccctaactacggtgggaccccc
agtgccaactacagcggccccggccctggcatgagcaacagcctgggcatgaacgccagt
agccccatgcacggccagggacctgggcagccctgtggctccatgcctgccgggcgaggc
ctgggtccgggggccagtgggcgaccctacctcggtgccaataccaacaccatggccccc
acctctcccagcatgccgcagcctgccggacagggccagggcatgagaccgcccctgccc
agtgttaaccaggaggcaggtctgtgccctggaaccaacgccatgcaggggcccaacgct
ggtcccaacccttctgcacagggcaggcagggaatgacccccatgcctcaccatccaggc
atgagccccagagggatggcctccagccctggtggcccctacagccagcagccaggggcc
aacacctccgggaggatgaccccacaggggccccaacctctctacaactcaccctcaggg
cccgtgcatatgggaggagaggggatggtgtgtcccactgaccccaaacagagacctcca
gagcagtacagggagagcaatactcctggtcctgccaccgagcccccacctaaacccaag
aagaccagcccggccaccatgaccaatgagaagattcgcatcctgtacgagatgggcgta
gagcccgagaggcgggtgtgggtggaccgttacctggccttcatggaggagaggggcacg
cctgtacccatgctgccagctgtgggcaggaagcccctagatctgtgccgcctctacctg
tgtgttcgagaaataggaggcctggccatggtgaacaagagcaagaagtggagggagctg
tccacccatctcaacgtgggcacgtccagcagctctgccagctctctgaagaagcagtac
atccagtacctgtttgcctatgagtgcagggtggagcggggagaggagccgccgctggag
atcccgggggaaaccaagaaacagcctaagatccagccgccctcaccggccaactctggc
tccctgcagggtcctcacaccccccagtctacaggtagcagctccatgactgagatgtca
gaggccatgaagcttcccactcccgccaccacaccacacggacacatgaccccccagcca
ggcaacaggaacagtgttggtatccgtgtccacgatcccttctcagaggtcagtgaccct
gcgttccacaagcgagggcccatgccctctggcgccccctaccagcaggttggtggtagt
gcagacccctccatgaggatgcagtacgacgccaacaaggacccctatgaagggccccgg
aaggggccagggggcagtgagccctatagaccaggtcagatgcccagtggtgccatgcag
gacatgtacccccgtggtcctccctcaggagccatgccagggatgggtatgggccctggc
ccacggtcacagtacccctacaggcctggctacgacaggagaccagaccatgtgatgggt
tcggaggggggtgtgcctccccctgggggtcagaacaacatggtaccttccagcggtgac
ccaagcatgtactctgccaaccgatacccccatcagcggccacatggacatgaaagttat
gggcagcagtaccctcacggccccatgccctatggctctcaccagtctgggatgtaccca
caacagggctataagaggccagtgggacaagaggggatgtacggtccccctgctaagcgc
catgagggtgaagcctacgacatgcagcagtacggagggcagcagccagacatgcaccgc
cagtatggagggggctacatggggccggagcacatgcccatgcagggccagtacccttac
ccctacagccgagaccgcatgggagccatccaggggccccaacaacacggcatgatgagc
ggaggccctcccttcccctccggagcctctgcagagggcccccaggccaacatgtggcac
cctaggacagacatgggctaccccggccgacagggccaggggccgggggatgacccagag
ggaaggaccctccaggacggccaatggccgtccggacacccgggccagcgccagtcccca
tacccatcttcctccatgccccccatggcttcccgacagcccctctcctcctaccagtct
aaccctgccatggccaaccacatcgctagagcccccagccccttcgcccggcccatgggg
ggacccggacccctttcccccaacaacgggggccactacatggcctctttgaagaaggca
gggatgcctgggttcatgccaggctcatacagtggggggatgtcagggcagggcattcta
ccgctccacagagatatcagcttccccatggggtctgtggaggccaccctgcccaaactc
aaggtccgacgcagacttacttccaaggagaccggaaccccagaggcgtggcgtgtgatg
atgtctctgaagtcaggtctgctggctgagagcacgtgggcgctggacaccatcaacatc
ctgctgtatgacgacagcactgtgtcctccttcaccctgtcacagctgcctggattcctg
gagctgatagtggagtacttccgccggagtctgatctccatctttgggatcctggatgag
tacgaggtgggcaccgagggccagaaggtgctgctcggaccaatcacagaccaggaagag
gagcttaccgttgcagagcttgacagccagttagacgaagagcagagggacagcgggcca
gagaagaccacagccaacggcagcacagaggagaaggaagagcctgtggaggtgactttg
aaagagacggtagagggggaggaaaaggagggggccgccaccgagcagtcccagccccca
gagcccaggcccaaacaggccagtaagtacgacaagctgcctgtgaaggtggaggaggac
caggtggaggaggaccaggagctcagtctgcccagggggttcacctctggcctgctgcac
tggaaggctggaggaggggactccacggcccacatccagacacactttgagagacgtggc
gaggagaccaacagtaagcctacagagagggaggataaggtagaggaggagaggaaggct
gttgtagaaaagggcatgactgagacagccactatggacgatatgctgagtgcctggcca
ggctctctgtcagagaggaacgggcttcccgggatgcagacccagagccctatcttcacc
ctgctggaggacgagcctcgctgctgggacgaggcgcccctctccacggccgaaccctgg
caggacgccctggcccgccgctgcgtttgcatctccaacatcgtccgcggcctctccttc
atcccggggaatgacaacgacatgtcctgccaccctggcctggtgctgatcctggggcgg
ctggtcctgctgcaccacctgcacccccagaggaggaggatgcctcccagctaccagaga
aaggaggagcagggccgggcctgcagtaaagaccagtggtggtgggactgtttgtcagcc
ctcagggagaacactctggtcaccctggctaacatctcaggtcaactagacctgtccctc
tacccagaaagcatctgtctgcccatcctggacgggctgctccactggatggtgtgtccc
tctgccgaggcccaggaccccttcaccacggcgggctgctcctcctccctcaccccccag
agactggtgctggagtgcctgtgcaagctgagcatccaggacaacaacgtggacctcctg
ctggccacgccgccgttcagccgccaggagaagctctacgccaccctggtgcaccacgtg
ggtgagcggaagtctcaggtgtgccgggagatggcggtggctgtgctctctaacctggcg
cagggggacccgaccgcggcgcgtgccatcgccctgcagaagggcagcgtggggatactc
atcggcttcctggaggactgcgtggccatgtgccagcaccagcagggaccccacagcctg
ttacacccagcagcacacccccaaccccccagcgttaacatgatgtgcagggccgccaag
gctttgctggccatggccaaggagaaccggacagagttggttctctacgagagcaggcta
ctggatatctccctgtcctctgtgctgagctcagccgtggcggccatcatgtgtgaagta
ctgtttaagattggacgctcctcgtga
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integrated database retrieval system
