Salvelinus namaycush (lake trout): 120024173
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Entry
120024173 CDS
T07522
Name
(RefSeq) tripartite motif-containing protein 54-like
KO
K10653
tripartite motif-containing protein 54
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120024173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120024173
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120024173
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-B_box
zf-RING_5
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
Sina_RING
Prok-RING_4
COG2_C
CDC37_M
Motif
Other DBs
NCBI-GeneID:
120024173
NCBI-ProteinID:
XP_038824272
UniProt:
A0A8U0PH93
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Position
Sna29:17769649..17785882
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AA seq
368 aa
AA seq
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MNFALGYKPGQLGESSTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDVFQAAN
PLWQSRGSKSMSTGGRFRCPSCRHEAVLDRHGVYGLQRNLLVENIIDIYKQEESSRPLNP
TKVEQQQLMCEEHDEEKINIYCLSCETPTCSMCKVFGQHKDCEVAPLQNVYKRQKTELSD
GIAILVAGNDRIQALLSQMEETCRSIQENGRRQKQSLCDKFDGLYAILEERKKELVGMIS
RQQDDKLDYIRSLMRRHGDYLEGAVKLVETAIQSMEEPQMAVFLQSIKDIFKQISTTAKV
SSMECPEPGYESMAHFVINTENVADMLKTIDFNTIRASGFQEKDGEDGYDLGEDLASLAT
GDVDYGRY
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgcactgggctacaaacctgggcaactcggggagtctagcacaatggataac
ttggagaagcagctcatctgccccatctgcctggagatgttcaccaagcctgtggtcata
ctgccctgccagcacaacctctgcaggaagtgtgccaatgacgtcttccaggctgccaac
cctctgtggcagtctcgggggtccaagtccatgtccacagggggtcgtttccgctgccca
tcatgtcgtcacgaggcagtgttggaccgccatggtgtgtatggcctacagaggaacctg
ctagtagagaacatcatagacatctacaagcaagaagagtccagcaggcccctaaacccc
accaaggtggagcagcagcagctgatgtgtgaggagcatgacgaggagaagatcaacatc
tactgcctgagctgtgagacgcccacctgctccatgtgtaaagtgtttggccagcacaag
gactgtgaggtggcccccctgcagaacgtctataagagacagaagacggagctgagtgac
ggcatcgccatcttggtggctgggaacgaccgtatccaggccctcctctctcagatggag
gagacctgcaggtccatccaggagaacggccgtcgtcagaagcagagtctgtgtgataag
tttgacgggctgtatgccatcctggaggagaggaagaaggagttggtggggatgatcagc
cgccagcaggatgacaagctggactacatccgctccctcatgcgtcgccacggagactac
ctggagggcgccgtcaagctggtggagacagccatccagtccatggaggaaccacagatg
gccgtgttcctacagagcatcaaggatatatttaaacagatcagcaccactgccaaggtg
tccagtatggaatgtccagagccgggctatgagagcatggcccattttgtcatcaacaca
gagaatgtggcagacatgctgaagaccattgacttcaacacaattagggcctcaggtttc
caggaaaaggatggggaggatggttatgatctgggtgaggacttggcatcgctggcaacg
ggggacgtagactatgggcgatactag
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