Salvelinus namaycush (lake trout): 120024208
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Entry
120024208 CDS
T07522
Name
(RefSeq) syndecan-1-like isoform X1
KO
K06257
syndecan 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04512
ECM-receptor interaction
snh04514
Cell adhesion molecule (CAM) interaction
snh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120024208
04514 Cell adhesion molecule (CAM) interaction
120024208
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120024208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120024208
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
snh04090
]
120024208
00535 Proteoglycans [BR:
snh00535
]
120024208
Membrane trafficking [BR:
snh04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
120024208
CD molecules [BR:
snh04090
]
Proteins
120024208
Proteoglycans [BR:
snh00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
120024208
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
I-set
Motif
Other DBs
NCBI-GeneID:
120024208
NCBI-ProteinID:
XP_038824326
UniProt:
A0A8U0TQQ5
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All DBs
Position
Sna29:complement(31324558..31328707)
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AA seq
191 aa
AA seq
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MSTLLISTLLFAMGACLPAITTSYSIPPEDLDGSGHDLESSGSGSGEWAEVSKGSVRFTT
ISTFTMTMSEDDLMFNAIDEEDKTVPIIMTDNTRNKISEDSDLTFDKRPKLDDNNGSAIG
NVAKSGGLLENKEALAAIIAGGVVGLALAASLLTLMVYNMKKKDEGGYTVNQKNKSNGGY
QKPKTKEEFIA
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atgagtactttactgatttccactttactgtttgctatgggtgcatgtttacctgcgata
accacatcgtattctattcctccagaagacctggatggatcgggacatgatctggaaagt
tctggctcaggttcaggggaatgggcagaagtgtccaaaggctcagtaaggtttaccaca
atctcaacatttacaatgacaatgagtgaagatgacttaatgttcaatgccattgatgaa
gaggataaaaccgtcccaattataatgacagacaacaccagaaataaaatatcagaggac
tcagacttgacctttgacaaaaggcctaagctagatgacaacaacggatcagccattggc
aatgtggcaaagagcgggggtcttctagaaaacaaagaagcgcttgcagctattattgca
ggaggagtggtgggactggccttggctgcctccctgttaacactcatggtctataacatg
aagaagaaagatgagggaggctacactgtcaaccagaaaaataagtcgaacggaggatat
cagaaaccgaagaccaaggaggagtttattgcataa
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