KEGG   Salvelinus namaycush (lake trout): 120024208
Entry
120024208         CDS       T07522                                 
Name
(RefSeq) syndecan-1-like isoform X1
  KO
K06257  syndecan 1
Organism
snh  Salvelinus namaycush (lake trout)
Pathway
snh04512  ECM-receptor interaction
snh04514  Cell adhesion molecule (CAM) interaction
snh04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:snh00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    120024208
   04514 Cell adhesion molecule (CAM) interaction
    120024208
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    120024208
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:snh04131]
    120024208
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:snh04090]
    120024208
   00535 Proteoglycans [BR:snh00535]
    120024208
Membrane trafficking [BR:snh04131]
 Exocytosis
  Calcium ion-dependent exocytosis
   Acrosomal exocytosis proteins
    120024208
CD molecules [BR:snh04090]
 Proteins
  120024208
Proteoglycans [BR:snh00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   120024208
SSDB
Motif
Pfam: Syndecan I-set
Other DBs
NCBI-GeneID: 120024208
NCBI-ProteinID: XP_038824326
UniProt: A0A8U0TQQ5
LinkDB
Position
Sna29:complement(31324558..31328707)
AA seq 191 aa
MSTLLISTLLFAMGACLPAITTSYSIPPEDLDGSGHDLESSGSGSGEWAEVSKGSVRFTT
ISTFTMTMSEDDLMFNAIDEEDKTVPIIMTDNTRNKISEDSDLTFDKRPKLDDNNGSAIG
NVAKSGGLLENKEALAAIIAGGVVGLALAASLLTLMVYNMKKKDEGGYTVNQKNKSNGGY
QKPKTKEEFIA
NT seq 576 nt   +upstreamnt  +downstreamnt
atgagtactttactgatttccactttactgtttgctatgggtgcatgtttacctgcgata
accacatcgtattctattcctccagaagacctggatggatcgggacatgatctggaaagt
tctggctcaggttcaggggaatgggcagaagtgtccaaaggctcagtaaggtttaccaca
atctcaacatttacaatgacaatgagtgaagatgacttaatgttcaatgccattgatgaa
gaggataaaaccgtcccaattataatgacagacaacaccagaaataaaatatcagaggac
tcagacttgacctttgacaaaaggcctaagctagatgacaacaacggatcagccattggc
aatgtggcaaagagcgggggtcttctagaaaacaaagaagcgcttgcagctattattgca
ggaggagtggtgggactggccttggctgcctccctgttaacactcatggtctataacatg
aagaagaaagatgagggaggctacactgtcaaccagaaaaataagtcgaacggaggatat
cagaaaccgaagaccaaggaggagtttattgcataa

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