Salvelinus namaycush (lake trout): 120024332
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Entry
120024332 CDS
T07522
Name
(RefSeq) collagen alpha-1(X) chain-like
KO
K19479
collagen type X alpha
Organism
snh
Salvelinus namaycush (lake trout)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
120024332
NCBI-ProteinID:
XP_038824480
UniProt:
A0A8U0TQG0
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Position
Sna29:complement(24466315..24472771)
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AA seq
659 aa
AA seq
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MDLRVTSVLLLLVALAVATPERYYHVQKVAKQQYPTKSHVQTVAGEPGIPGSPGEPGPMG
PPGPPGKSGMGHPGPKGPAGTPGPAGYSAAGKAGKPGGPGKPGSNGMPGEKGHTGATGAM
GPRGSPGSPGSPGPAGQSSVGKPGPHGLPGGMGPRGESGLKGHPGIPGLPGQRGEKGVGI
HGAPGANGAVGPMGPSGMPGQPGVGKSGATGYPGEPGKSGTPGRDGAPGAMGMPGPKGHN
GNPGAGSPGKPGENGSPGMSGNMGPKGPQGHAGQPGEPGMPGVGKPGANGMPGDRGSPGT
SGTTGQKGEPGPTGYTGATGATGLTGPAGPQGARGFQGETGIQGLKGDVGMVGAPGAKGT
KGDQGHQGYAGKSGIPGAAGPPGATGATGHQGNKGGQGHTGAPGTPGANGLPGAKGHTGT
PGGPGKPGENGISGGRGPVGPSGPAGQPGLKGHPGLPGTPGPAGQMAKGVSGPMGPPGAP
GSRGHDGNPGAMGPPGQPGPPGEMVYHHEKSMPIKSHEIMMPHEMMKAPMSAFSAVLTRA
YPSAGSPIQFNQIIYNGEQHYDSQTGIFSCQVPGLYYFSYHMHVNGANALVALYKNGEPI
MFSYDEYNKGFLDQLSGSTVLMLNAHDQVYIQVPDEETNGVFAADNVHCSFSGFLIAST
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggacctcagggtgacaagcgttctcctcctcctggtggccttggccgtggcaacacca
gagagatattaccatgtacagaaagtagccaagcagcagtatcctaccaagagccatgtc
caaactgttgcaggggagccaggtattccaggatcccctggtgagccaggacctatgggc
ccccctgggcctcccggcaagagtggcatgggacatcccggaccaaagggcccagccggg
acccccggacctgctggctactctgcagctggcaaggctggcaagccaggtggtccaggg
aaaccaggtagtaatggcatgcctggtgagaagggccatactggcgcaactggcgccatg
ggtccaagaggatctcccggttcccctggaagcccaggacctgctggacaatcttctgtt
ggcaaaccaggcccacacggtctgcccggcggcatggggccaaggggtgagtccggactt
aaaggacatccaggtatccctggtctgccaggacaaaggggagagaagggagttggtatt
catggggcaccaggtgcaaatggtgcagtgggaccaatgggaccatctggtatgccaggt
caacctggagttggtaagtctggtgccactggataccccggggagcctggaaagtcaggt
actccaggtagggatggagctccaggagccatgggtatgccagggccaaagggccacaat
ggaaaccctggggcaggatcaccaggaaagccaggtgagaatggcagtccaggtatgtct
ggaaatatgggacctaaaggtccccagggacatgctggacaaccaggtgaacctggcatg
ccaggagttggtaaaccaggagctaatggcatgccaggagacagaggatcaccaggtaca
tcaggaaccactggtcaaaaaggagagccagggccaacaggttacactggggcaacaggt
gctactgggcttacgggtccagctggtccccagggtgctagaggattccagggagagaca
ggtattcagggacttaaaggtgatgtcggcatggtgggagctcctggggcaaagggaacc
aagggagatcagggacatcaaggttatgcagggaagtcaggtatccccggggcagcagga
cctcctggtgcaacaggtgctacaggacatcagggtaataagggaggtcagggccatact
ggcgctccaggtactccaggtgcaaatgggcttccaggagcaaagggacacacaggcaca
cctggaggacctgggaaaccaggcgagaacggtatctcagggggaagaggaccagtgggg
ccttcaggtccagcaggtcaaccaggtcttaagggtcacccaggtcttcccggtacaccc
ggcccagctggccagatggcgaagggagtttctggtcccatgggtccacctggagctcct
ggttccagaggtcacgatggtaacccaggtgctatgggacctcctggccaacctggtccc
cctggtgagatggtctaccatcatgagaagagcatgcccataaagtcccatgagattatg
atgcctcatgagatgatgaaggcccctatgtctgccttcagcgctgttctgactagggct
tacccttcagcaggatcacctattcagttcaaccagattatttacaatggtgagcagcac
tacgattcccagactggcatcttctcctgccaggtaccaggtctctattatttctcctac
catatgcatgttaatggtgctaatgcattggtggcactgtacaaaaatggtgagccaatc
atgttctcatacgatgagtacaataagggcttcttggatcagttgtctggcagcactgtc
cttatgctgaatgcccatgaccaagtctacattcaggtccctgatgaggagaccaatggt
gtcttcgctgccgacaatgttcactgctctttctctgggttcctgattgcttcaacgtga
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