Salvelinus namaycush (lake trout): 120024377
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Entry
120024377 CDS
T07522
Name
(RefSeq) leucine-rich repeat and fibronectin type-III domain-containing protein 5-like
KO
K16358
leucine-rich repeat and fibronectin type-III domain-containing protein 5
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
120024377
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120024377
04990 Domain-containing proteins not elsewhere classified [BR:
snh04990
]
120024377
Cell adhesion molecules [BR:
snh04515
]
Immunoglobulin superfamily
SALM family
120024377
Domain-containing proteins not elsewhere classified [BR:
snh04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
120024377
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
I-set
Ig_3
LRR_4
LRR_5
LRR_1
ig
Ig_2
LRR_14
LRR_9
fn3
Sp38
LRR_Zer-1
V-set
DHU1_N
LRR_EndoS
FN3_DSCAM-DSCAML_C
Motif
Other DBs
NCBI-GeneID:
120024377
NCBI-ProteinID:
XP_038824535
UniProt:
A0A8U0PGG2
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Position
29:complement(5992332..6003911)
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AA seq
818 aa
AA seq
DB search
METLLVYLMVLGMAVKAHKVQLCPKRCVCQMLNPNLATLCDKKGLLFVPPNIDRHTVEMR
LGDNFVTSIKQRDFANMTKLQDLTLSRNTIGSISPHAFKDLENLRALHLDSNRLTRLTND
TFSGMSKLHHLILNNNQLIHIHTGAFNDLTALEELDLSYNNLESTPWVAIQRMTSLHTLG
LDHNMLSYIPIGTFSGLQKLKRLDVTSNKLQKLPPDPVFQRAGVLATSGSMGPSSFALSF
GGNPLRCNCELLWLRRLRREDDLETCAAPQHLAGRYFWTVSEEEFLCEPPLITRHSQELR
ALEGQSVALRCKARGDPDPIIHWIAPDGRLMSNSSRAMVHSDGTLDILITTVKDSGSFTC
VASNPAGEAQQTVDLVIVKLPHITNGTVKKEPNPGSSDIATVMKTAGEGGSVVPLGNTKT
SQEKKVVITEATSTSVLVRFNFQRSIPGIRMFQIQYNGTYDDSLVYRMIPSSSKSILVNN
LAAGTQYDLCVLAIYDDLVTSLTATRVVGCVRFTTEPQYLRCHFMQSQFLGGTIVVIIGG
IIVASVLAFIIFLIVRYRVCNQGDEDKALEMGEIPSLSSDGQLQGCGVPKTMSKSLSKQI
LQPEKPETEDQESLRVALPPRKPVKQQQPPAPTTTTSTKPSIPDCTVSTSAASHSWHPAS
PVTLRQKRADITATGGPKPGEARRAEGQTDVELENTNRNNSSEAKIAAALAVPVPARSTK
WTPVARRPRPPGASSHHYMTVPTGGVRVNRRHSLNVDSYKERCYVSLVQQQPKPGGSLCS
KRSLSMSGELPTLESAMANIRRGRDKLSRSEWLLESTL
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggagaccctgctagtttacctgatggtccttggcatggctgtaaaggcccacaaggtc
cagctgtgcccaaaacgctgtgtctgccagatgctcaaccccaacctggcaaccctctgc
gacaagaagggcctcctcttcgtccccccaaacatcgaccggcacaccgtcgagatgcgt
ctgggcgataacttcgtcacgagcatcaaacagcgggactttgccaacatgaccaagctt
caggacctgacgttgtctcggaacaccatcggttccatctcgcctcacgcctttaaagat
ctggagaacctcagggccttgcacttggacagcaaccgtctgacgaggctcaccaacgac
accttcagcgggatgtccaaacttcaccatctcattcttaacaacaaccaactgattcat
atccacactggggccttcaatgatctcacggctctagaggagttagatctgtcctacaac
aacttagaaagcaccccctgggtggccatccagagaatgaccagtctccacaccctgggc
ttggaccacaacatgcttagctacatccctataggaaccttctccggcctgcagaagctc
aaacggcttgacgtcacctccaacaagctccagaagcttccgccagaccctgtgttccag
cgggctggggttctggccacgtcaggaagcatgggtccgtcgtcattcgcgttgagtttt
ggggggaacccactgaggtgtaactgtgagctgctgtggctgaggaggctgaggcgggag
gatgatctggagacatgtgcggctccgcagcacctggctgggcggtacttctggaccgtg
tctgaagaagagttcctctgtgaaccgcctctcatcaccagacactcccaggagctgcga
gcgctggagggtcagagtgtagctctgcgctgtaaggccaggggcgacccagaccccatc
atccactggattgcgccagacggccggctcatgtccaattcctcccgggctatggtgcac
agtgacgggactctggacatcctcatcaccactgtgaaggactcaggctccttcacctgt
gttgcctccaacccggccggggaggctcaacaaactgtggacctggtgatcgtcaaactc
ccacacatcaccaacggtactgtgaagaaggaaccgaacccaggttcttctgatatcgcc
acggtaatgaagacggctggggaaggcggaagcgtggtgccactgggaaacacgaagacg
agccaggagaagaaggtggtgatcactgaggcaacgtctacctccgtcctggtcaggttc
aacttccagaggagtataccgggcatccgaatgttccagatccaatacaacggaacctac
gatgactctctggtttacagaatgatcccttcaagcagtaagagtatcttggtgaacaac
ctggcggccggtacacagtacgacctgtgtgtgctggccatctacgacgacctggtgacc
tccctgaccgccacgcgagtggtggggtgtgtccgcttcaccaccgagccacagtacctc
cgctgccacttcatgcagtcccagttcctgggaggcaccatcgtggtcatcatcggaggg
atcatcgtggcgtccgtcttagctttcatcatcttcctcatcgtgaggtaccgagtgtgt
aaccaaggcgatgaggataaggctttggagatgggtgagatcccatctctgagcagtgat
ggtcagctccagggctgcggcgtccccaagaccatgtccaaatctctgtccaagcagatc
ctccagccagagaaaccagagacggaggaccaggagtctctgagggtggcccttcctcct
cgtaaaccggtcaagcagcagcaacccccagccccaaccaccaccacatctaccaagccc
tccatccccgactgcactgtctctacttccgcagccagccactcctggcaccctgcctcc
ccggtcaccctgaggcaaaaacgggccgatatcactgccaccgggggtccgaaacccgga
gaagctcgccgagccgaaggccagacagatgtggagttagagaacacaaaccgtaataac
tcgtcggaagctaaaattgctgccgccttggctgtacctgttcctgcccgttccacaaaa
tggacgccggtcgctaggcggccgcgcccccctggagcctcctcccaccattacatgacg
gtacctacagggggcgtgagggtgaaccggcggcactcgctgaacgtggactcgtacaag
gagcgctgctatgtcagcctggtacagcagcagccaaaacctggcgggagtttgtgctcc
aaacgcagtctgtccatgagcggagaattgcccacgttggagagtgcaatggcaaacata
cgcagaggcagagacaagctgtcccgatctgagtggcttctcgaaagcactctatga
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