Salvelinus namaycush (lake trout): 120024413
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Entry
120024413 CDS
T07522
Name
(RefSeq) syntaxin-binding protein 5-like isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120024413
Membrane trafficking [BR:
snh04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
120024413
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
120024413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
ANAPC4_WD40
WD40
Beta-prop_IFT140_1st
WD40_Prp19
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_NUP159_NUP214
Lgl_C
KNTC1_N
Beta-prop_EML
Beta-prop_Vps41
Beta-prop_VPS8
CFAP43_N
VPS8_N
Beta-prop_WDR35_TULP_N
Synaptobrevin
WD40_like
Beta-prop_IFT122_2nd
Motif
Other DBs
NCBI-GeneID:
120024413
NCBI-ProteinID:
XP_038824579
UniProt:
A0A8U0TR41
LinkDB
All DBs
Position
Sna29:complement(2142660..2322068)
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AA seq
1139 aa
AA seq
DB search
MKKFNIRKVLDGLKEQASSSASSGQSGTQENNLMQETLQSENFQLCKTVRHGFPYQPSSM
AHDPVQKILAIGTQSGALRLFGRPGVECYCQHESGAAVISLQFLINEGALVSALADDSVH
LWNLRQKRPAILHSLKFNRERITFVHLPFQSKWLYIGTEKGNIHIVNVESFTLSGYVIMW
NKAIELSSKAHPGPVVHISDNPMDEGKLIIGYESGIVVLWDLKSKKADYRYTYDEAIHSV
AWHHEGKQFICSHSDGTLTIWNIKGQGKPFQTITPHGKQPKDGKKPEPCKPILKVEYKTT
RLGDPFMILSGGLSYDTVGRRPCLTVMHGKSTAVLEMDYPIVDFLTLCETPYPNDFQEPY
AVVVLLEKDLVVIDLAQNGYPIFENPYPLTIHESPVTCCEYYADCPVDLIPALYTVGSRQ
KRQGYSKKEWPISGGNWGLGTQSYPEIIITGHADGTVKFWDASAIMLQVLYKLKTAKVFE
KSRNNKEEKQNTEIVDEDPFAIQIMAWCPESRILCVAGVSANLIIYRFSKQEITTEVVQL
LEVRLQYEVNDMESPPEGGGGGDRGGGGDRDLPTPGTASPSPQTTGPPTHPSTSSNSSDG
VRDNVACLKVRSTPLKQSPGYQVELVVQLVWVSGEPPQQITSLALNSSYGLIVFGNSNGL
AVVDYLQKTVLLNLGTVELYGHNDPYQRQPRSPRKTRQPSGGLCDINEGSASEDRCKSPT
SVLALNHQQFYNGSGGRGAKMSRKLSLPTELKPDLDHRDNSFSRSRSSSVTSIDKEAREA
ITSFHFCETFARKGDSTITPCLYVGTSLGTVLAMALNLPPAGEQRLLQPVIVLPSGTLGR
LKGSILRMAFLDNTGTFLPPAFELWYEPNAVGADSEERDKARKRRPVSVSPSTSQELQES
QYAVVCSEKQAKVIALPSQNCIFKHSITETSFVLRADVVQMNIGNCVACFCANGHIMTLS
LPGLRPLLDVNYLPLTDMRIARTFCFTNLGQAMYLTSPTEIQRITYSQETCENLQEMLGE
LFTPVETPEAPNRGFFKGLFGGGATSLDREELFGETQAGKASRGLAQHIPGPQGLEGMKG
AASGVVADLARARIALDERGQKLGELDERTAAMLASADSFGKHAHDMMLKCKDKKWYQF
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagtttaacatcaggaaggtactggacggcctaaaggagcaagcgtcttcctcg
gcttcgtctggccagtcggggacccaggagaacaatttgatgcaggagacccttcagtcc
gagaattttcaactctgcaagactgtccgtcatggcttcccctatcagccgtcgtccatg
gcccatgacccagtccagaagatcctggccattgggacccagagtggggccctcagactg
tttggtcgtccaggtgttgagtgctactgtcaacatgagagtggagccgctgtcatctcg
ctacagtttctcatcaacgagggggcgctggtgagtgctctggcagatgacagcgtgcac
ctttggaacctgaggcagaagaggcccgccatcctccactcactcaagttcaacagagag
aggatcacgttcgtccacctgcccttccaaagtaaatggctgtacatcggcacagagaaa
ggaaacatccacatcgtcaacgtggagtccttcacactctcaggctacgtcatcatgtgg
aacaaagccatcgaactatcctccaaggcccacccaggtcctgtggtccacataagtgac
aaccccatggatgagggaaagcttataattggatatgagtctgggatcgtggtcctgtgg
gatctgaaatcaaagaaggcagactaccggtacacgtatgacgaggcaatccactcggtt
gcctggcaccatgagggcaagcagtttatctgtagtcactcagacggaacgctcaccata
tggaacattaagggccagggcaagccatttcagacgatcaccccacacggaaaacagccc
aaggatggaaagaagccagagccttgcaaacccattctcaaagtggagtacaagaccact
agactgggagacccatttatgatcctgtctggaggtctgtcttatgacacggtgggtcgg
cggccatgtctgacggtgatgcatgggaagagtacagccgtgctggaaatggattacccc
atcgtagacttcctcacgctctgtgagacgccataccctaacgattttcaggaaccttat
gctgttgtggtccttctcgaaaaggatttagtggtgatcgaccttgcacaaaatggttac
cccatattcgagaacccctatccactgaccatccacgagtctcctgtgacctgctgtgag
tactatgctgactgccctgtggacctcatacccgcactttacactgttggctccagacag
aagcgacagggctacagcaaaaaggaatggcccataagtggtggtaactggggccttggc
acacagagctaccctgagatcatcatcactgggcatgctgatgggactgtgaagttctgg
gatgcttctgcaataatgctccaggtactatacaagctgaagacggccaaggtgtttgag
aagagcaggaataataaggaggaaaagcagaacacggagattgtggatgaggacccgttt
gccatccagatcatggcctggtgtcctgagagcaggatcctgtgtgtggccggggtgtct
gccaacctcatcatttaccgcttcagcaagcaggagatcaccaccgaagttgtacagctg
ttggaggtgcgcttgcagtacgaggtgaatgacatggagtcccctccagaggggggagga
gggggtgaccgcggaggcgggggggaccgtgacctgcccacccccggaacagcctcaccc
agcccccagaccaccggacccccgacacacccctccaccagcagcaactcctctgacggg
gtccgagacaacgtagcctgccttaaggtgcgtagtacccctctaaagcagtctccaggg
taccaggtagagttggtggtgcagctggtgtgggtgagtggagagcccccccaacagatc
acaagcctggccctcaactcctcctacggactgattgtgtttgggaacagtaatggtttg
gcagtggtggactacctccagaagacagtgctgttgaacctggggacagtggagctgtat
gggcataacgatccctaccagagacagcctcgctcgccacgcaagacacgccagccttcc
ggaggtctgtgtgatatcaacgagggctctgcctcggaggaccgctgcaaatcccccact
tcagtgttggcgttaaaccatcagcaattctacaatggaagtgggggtagaggagcaaag
atgtcacggaaattaagcttgcctactgagctaaagccagacttggaccaccgggacaac
tccttcagccgttcacgctcctcctccgtcacctccattgacaaggaggcacgcgaggcc
atcacctccttccacttctgtgagacattcgctcggaagggggacagcaccatcacaccc
tgcctgtacgtgggcacctccctgggcacagtgctggctatggccctcaacttgcctcct
gctggggaacagaggctactgcagcccgtcatcgtcttgcctagcggtaccctggggcgt
ctaaagggcagtatcctgaggatggccttcctggacaacacgggcaccttccttccccct
gccttcgagctgtggtacgagcccaacgccgtgggcgccgacagtgaggagcgagacaaa
gcccgtaaacgccgcccggtctctgtgtcgccctccacctcccaggagctacaggagagc
cagtatgcggtggtgtgctctgagaaacaggctaaggtcatagcactgccctcccagaac
tgcatattcaaacacagcatcacagagacatcgttcgtcctgagggctgacgtggtccag
atgaacatagggaactgtgtggcctgtttctgtgctaacggacacatcatgaccctcagt
ctgccggggctgagaccgttgcttgatgtaaactacctgccgctgacagacatgcggata
gcccggaccttctgcttcaccaaccttggccaggccatgtacctcacctcccccactgag
atacagaggatcacatacagccaggagacatgcgagaacctgcaggagatgctaggagaa
ctgttcacaccagtggagaccccggaggctcccaaccgaggattcttcaagggccttttt
gggggaggagcaacttccctggacagagaggagctatttggcgagacgcaggcgggtaaa
gcatcccgtggccttgcccagcacatcccgggtcctcagggactggaaggcatgaagggg
gcagcctcgggcgtggtggcggacctggcacgtgcccggatagcgctggacgagagaggg
cagaaactgggcgagctggacgagaggacggccgccatgctggccagcgcagactccttt
ggcaaacacgcccacgatatgatgctgaagtgcaaagacaagaagtggtaccagttctga
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