Salvelinus namaycush (lake trout): 120024445
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Entry
120024445 CDS
T07522
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120024445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120024445
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120024445
U7-dependent histone pre-mRNA processing factors
120024445
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
120024445
NCBI-ProteinID:
XP_038824612
UniProt:
A0A8U0PGW1
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Position
Sna29:10444323..10461847
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AA seq
796 aa
AA seq
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MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDAMKRYVHQVDAVLL
SHPDPLHLGALPYAVGKLGLNCPIYATIPVYKMGQMFMYDLYQSRNNTEDFNLFTLDDVD
CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESVSRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQEAKNSVILTYRTT
PGTLGRYLIDNPGEKMLDLEIRKRVKLEGRELEEYLEKERMKKEAAKKLEQEKEVDVDSS
DESDMEDDLELPAMVKTKHHDLMMKGDGVRKGSFFKQAKKSYPMFPTHEERVKWDEYGEI
IRPEDFLVPELQATEEEKNKLESGMAKGDEPMDQDSSSKVPTKCTSTTENLEIKARVTYI
DYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFTKDIKVYTPKLQETVDA
TSETHIYQVRLKDSLVSSLQFCRAKDTELAWIDGVLDMRVVKVDTGVLPEEGVVKGEKGA
GEEAVEDGELAMDVTPADDGTTDHSVVAQQRAMKTLFGEDMREPSEESDVIPTLEPLPAH
EIPGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCD
DYYKIRELLYQQYAVV
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgacttctattatcaaactgaccgctgtgtcaggggtgcaggaggagtctgccctctgc
tacctgctgcaggtggatgagttccggttcctcctggactgtggctgggatgagagcttc
tctatggacattattgatgccatgaaaaggtatgtccaccaggttgatgcggtgctcctc
tcccatcctgaccccctgcacctgggggctctgccctacgctgtgggcaagctgggcctc
aactgccccatctacgccaccatccccgtctacaagatgggtcagatgttcatgtatgac
ctgtatcagtcacgcaacaacactgaggacttcaacctgttcaccctggatgatgtagac
tgcgcttttgataaaatccagcagttgaagtactcccagattgtaaatctgaaagggaaa
ggacatggtctgtccatcactccacttccagctggtcacatgatcggtgggaccatctgg
aagattgtgaaggatggggaggaggagattgtttacgcggtggacttcaaccacaagcga
gagatccacctgaatgggtgtacattggagtcggtgagtcgtccctctctgctcatcaca
gactcatttaacgctacgtacgtgcagccgcgtcgcaaacaaagggacgagcagcttcta
accaatgtgatggagacgctacgcggtgacggcaacgtgctgattgccgtggatacggcg
ggccgtgtgcttgagctggctcaactgctggaccagatctggaggacgaaggacgccggt
ctcggggtctactctctggccctgctcaacaacgtcagctacaacgtggtggagttctcc
aagtctcaggtggagtggatgagtgacaagctgatgcgttgcttcgaggacaagcgcaac
aatcccttccagtttcgccacctgtccctgtgtcacagcctggccgacctggcccgtgtg
cccagccccaaggtggtgctctgcagccagcccgacctggagtctggcttctcccgcgag
ctcttcatccagtggtgccaggaggccaagaactcagtgatcctcacctaccgcaccacg
cctggcaccctgggccgctacctcatcgataaccctggggagaagatgctagacctggag
attagaaaacgggtgaagctggaaggcagggagctggaagaatacctggagaaagagaga
atgaagaaggaagctgccaaaaaacttgaacaagaaaaagaggtggatgtggactccagt
gacgagagcgacatggaggatgacctggagctgccggcgatggtgaagaccaaacaccac
gacctgatgatgaagggagacggcgtccgcaagggcagcttcttcaaacaggccaagaag
tcctaccccatgttccccacccacgaggagagggtcaagtgggacgagtacggagagatc
atcagaccggaggacttcctggtaccagagctccaggccacagaggaggagaagaacaag
ctggagtcaggcatggccaaaggagacgaacccatggaccaagactcctcatccaaagta
cccaccaagtgtacctccactacagagaacctagagatcaaagccagggtgacgtacatc
gactacgaggggcgttcggacggcgactctatcaagaagatcatcaaccagatgaagccg
cggcagctggtgatcgtgcacggccctcccgaggccagcctggacctggccgagtcctgc
aaggccttcaccaaggacattaaggtctacacgcctaagctgcaggagactgtggacgcc
accagtgagacacacatctaccaggtgcggttgaaagactcgctggtgagctcgctgcag
ttttgccgcgccaaggacacggagctggcgtggatcgacggcgtgctggacatgcgcgtc
gtcaaggtggacacaggcgttctgcccgaggagggcgtggtgaagggtgaaaagggagcc
ggcgaggaggccgtggaggacggcgagctggccatggacgtgacccctgctgacgacggc
accacagaccatagcgtggtggctcagcagcgcgccatgaagacgctgtttggcgaggac
atgcgcgagccgtcggaggagagtgacgtcatccccaccctggagcccctgcccgcccac
gagatcccaggccaccagtcggtgttcatcaacgagccgcgcctgtccgacttcaagcag
gtgctgctgagggaaggcatccaggctgagtttgtgggaggagtgctggtgtgcaacaac
atggtggccgtccgcaggacggaggcagggcgcatcggcctggagggctgcctgtgtgat
gactactataaaatccgtgagctgctctatcagcagtatgctgtggtatag
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