Salvelinus namaycush (lake trout): 120024540
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Entry
120024540 CDS
T07522
Name
(RefSeq) transcription factor Sox-7-like
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120024540
Transcription factors [BR:
snh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120024540
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GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
120024540
NCBI-ProteinID:
XP_038824748
UniProt:
A0A8U0TQW7
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Position
Sna29:complement(37844026..37848176)
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AA seq
432 aa
AA seq
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MSALISVYSSWPESFECSTGDGDVPDGHGSQRTPADKASEPRIRRPMNAFMVWAKDERKR
LAVQNPDLHNAELSKMLGKSWKALTPLQKRPYVEEAERLRVQHMQDYPNYKYRPRRKKQL
KRICKRVDPGFLLSSLGGPDQNALTDSRSLCLPLGLDKEGDGGFSSRSSLSPVRSLRDVP
SSSTYPYGLPTPPEMSPLDTALDHDYPSYYPSSSSSTSSVSEERHQHQRQGQAPGGGGGG
GGHMGLSPPPYHPDYTQTQTSIHCGSHSHLAHLSHMSQAQSGGLIPGHPLSYYSPSSWSS
QLQVHPGLQPHHHPHLGHLSPGHHHQHHLGQLSPPPEQNHDQNHGQLETLDQLSQVELLG
EVDRDEFDQYLNSTAAGAAAAGIGVFHSEHGGGMTVTGHIQVTSGSSVVAETSLISVLAD
ATAAYYNNYGIS
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcacttatcagcgtgtactcgtcttggccggagagctttgagtgctcaacggga
gatggggacgtgcctgacggacacggctcgcaaaggactcccgcggacaaagcatcggag
ccgcgcatcagacggcccatgaacgcgttcatggtctgggctaaagatgagaggaagcgc
ctggctgtccaaaacccagacctgcacaacgcagagctcagcaagatgctgggcaagtcg
tggaaggccctgacccctcttcagaaacgtccctacgtggaggaggccgagaggctgcgc
gtgcagcacatgcaggactaccccaactacaagtatcgccctcgtcgtaagaagcagctg
aagcgcatctgtaagcgtgtggaccccgggttcctactgagcagcctgggggggccggat
cagaatgccctaactgactcccggagcctctgtctccctctgggtttggataaagaaggg
gatggtgggttttcatcacgctcttccctcagcccggttagatccttaagagatgtaccg
tccagcagcacctacccctacggcctccctaccccgcctgagatgtcccctctggatacg
gccctggaccacgactacccctcctactacccctcctcttcttcctccacttcatccgtc
tcagaggagcgccaccagcaccagcgtcagggtcaggcccccggaggtggaggtggtggt
ggaggtcacatgggcctgagtcctccgccctaccaccctgactacactcagacacagact
tccatccactgtggctcccactcccacctagcccacctctcccacatgtcccaggctcag
tccggaggcctcatccctgggcatcctctgtcctactacagcccatcctcatggtcctcc
cagctccaggtccacccgggcctccagccccaccatcacccccacttggggcacctctcc
ccgggtcaccaccaccagcaccacctgggtcagctctctcctcctccagagcagaaccat
gaccagaaccacggtcaactggagacactggaccagctgagtcaggtagagcttctaggg
gaggtcgaccgtgatgagttcgaccagtacctgaactcgaccgcggcaggtgcggcggca
gcggggataggggtattccactctgaacacggaggaggaatgactgtgacgggtcacatt
caggtgacgtctgggagcagcgttgtcgcggaaaccagcctgatctccgtgttagcggac
gccacggcagcgtactacaacaactacggtatctcttag
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