Salvelinus namaycush (lake trout): 120024733
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Entry
120024733 CDS
T07522
Name
(RefSeq) B-cadherin-like isoform X1
KO
K05689
cadherin 1, type 1, E-cadherin
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04371
Apelin signaling pathway
snh04514
Cell adhesion molecules
snh04520
Adherens junction
snh05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
120024733
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
120024733
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
120024733
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
120024733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
snh03036
]
120024733
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120024733
04090 CD molecules [BR:
snh04090
]
120024733
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
120024733
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Major cadherins
120024733
CD molecules [BR:
snh04090
]
Proteins
120024733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Big_13
Cadherin_4
RibLong
PKD_4
DUF1366
Motif
Other DBs
NCBI-GeneID:
120024733
NCBI-ProteinID:
XP_038824939
UniProt:
A0A8U0TRG4
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Position
Sna30:complement(21801039..21815625)
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AA seq
880 aa
AA seq
DB search
MGAFWFVELGVLTLFLQAFKPGSSEESKCLPGFNSEMYIFKVERNHLQSGRRLGKVVFDD
CTSRTSFLFHSEDSRFKVDGDGTLKLKRGVTLHNGHKEFYVSTQSMGKKITVPVRVLHEA
RHGHHHHEMTTQPQPGSSLSLPVLNFHKSSGGLKRRKRDWVIPPINFPENDRGPFPKNMV
QIRSNNDKEVKILYSITGPGADQPPVGLFTVDKNSGTLYVTQPLDREKRDQYVLLAHAVA
VGEGKAEDPMEIIVKVIDMNDNKPVFTQNPFTGTVPEASKPGDEVLQVTATDADEGGSAN
SDVRYTIISQEPPLPSPIMFVINPVTGVIRVNEHGLDREKILKYTLEIQAADMEGNGLTC
FGKAIITVTDSNDNAPQFVTPSYTVSVPENKADALVVKMPVTDGDEPHSSAWATTFKIVD
GDPQGLFNVSTGPSKLEGIITTVKPLDFEKNNKYTLLVTVVNEVPFAVPLPTSTATVIVN
VEDVNEAPVFTPVEKIIRKPEDLPVDSDLVLYTATDPDTARNQKVTYKIRNDLAGWLSIN
KDTGLIKVKAPMDRESTFVQDNKYSVVVLGTDNDEIPATGTGTLIIELEDVNDNPPTIDE
RMIKVCNKESSPQLLSITDKDGADFAAPYTVQLQGSSNSNWTARMNDTKTGIILTLKTML
DSGDYTVVLRVSDTKGLHQESTIQASVCDCKGADVQCTDKAVAGFGLSSILGILGAILLL
LLLSLLLLMFLRKRGGEKKEPLLQEDDVRDNIYYYDEEGGGEDDQDFDLSVLHRGLDNRP
DVFRNDIAPTMARPEYRPRPANPADIGNFIDDNLKAADNDPTAPPYDSLLVFDYEGGGSE
AGSLSSLNSSSSGDDQDYDLLQQWGPRFKKLSDMYGGGED
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgggggccttttggttcgtggagttgggggtattaacattgtttctccaggctttcaag
ccaggttcgtcggaggagtcaaaatgtctaccaggtttcaattcagaaatgtacattttc
aaagtggaaagaaatcacttacaaagtggccggagactaggaaaagtggtttttgatgac
tgcaccagccgcaccagctttctctttcactccgaggattcacgtttcaaagtagatggc
gacgggacgctgaaactgaagaggggggtgactctgcataatggacataaggagttctat
gtctctacccagtccatgggcaagaagatcacggttccagtcagagtgctgcatgaggcc
agacacggccaccaccaccatgagatgaccacccagccccagcctggatcaagtctgtct
ctacctgttctgaacttccacaagtcttcaggaggtctgaaaagaaggaagagggactgg
gtcattcctcccatcaacttcccagagaatgaccgaggccccttcccaaaaaatatggtg
cagatcaggtccaacaatgataaagaggtgaagatcctgtacagcatcactggtcctggg
gcagaccaacctcctgtgggactcttcactgtggacaaaaactctggaactctctatgtg
acccagcctttggacagggagaaaagagaccaatacgttctcctagcccatgctgttgca
gtgggtgaaggtaaggctgaggatcccatggagatcattgtgaaagtcattgacatgaat
gacaacaaacctgtatttacccaaaatccatttacgggaacagtccctgaggcatcaaaa
ccaggtgatgaggtattgcaggtaacagccactgatgctgatgaggggggctctgccaat
tctgatgtcagatacaccattatcagtcaggagcctccactaccaagccccatcatgttt
gtcatcaaccctgtgaccggagtgattcgggttaacgaacatgggttggacagagagaaa
attcttaaatatactttggaaatccaagctgccgatatggagggaaatggccttacctgc
tttggcaaagccatcattacagtaacggacagcaatgacaacgcgccacagtttgtgacg
ccttcgtacactgtgtcagtcccagagaataaagcggatgccttggtggtgaaaatgcca
gtgactgatggggatgagcctcactcctctgcctgggccaccaccttcaagatagttgac
ggggaccctcaaggccttttcaatgtgagcacaggccctagcaagctggaaggcatcatt
acgacagtaaagccccttgactttgagaagaacaacaagtacactctgctggtcactgtg
gtgaatgaagtcccatttgccgtccccctgcccacctccactgctactgttatagtgaat
gtggaggatgtgaatgaagctccagtcttcaccccagtggagaagattatcaggaaacct
gaggacctccctgtggacagtgacctggttctgtacacagccacagacccagacactgca
aggaatcagaaagtcacatacaagatacgcaatgatcttgctggatggctcagtatcaac
aaagacactgggctgatcaaagtcaaggcccccatggacagagaatccacttttgtccaa
gacaacaaatactctgttgttgttctgggcactgacaacgatgaaatcccagcaactggc
actggcacccttatcatagagctggaggatgtgaatgacaaccctccaaccatcgacgag
aggatgattaaggtctgcaacaaggagtcctccccacagctgctgtcaatcactgataaa
gacggagcggacttcgctgctccatacactgtacagcttcaggggtcgtccaactctaac
tggactgccagaatgaatgacacaaaaactggcattatcctgacactgaagactatgttg
gatagtggagattacacggttgtcctgagagtgtctgacaccaagggcctgcaccaggag
agcaccatccaggcctccgtgtgtgactgcaaaggagctgatgtccagtgcaccgataaa
gctgtagcaggcttcggcctctcgagcattctgggaattctaggagccattttactactc
ctattgttgtctcttctgctgctcatgttcctgaggaagagaggtggtgagaagaaggag
cctctgctgcaggaggacgatgtcagggacaacatctactactatgacgaggagggaggt
ggcgaggatgaccaggatttcgacttgagtgttctgcacagaggtctggataaccgtcct
gatgttttccggaatgacatcgctccaaccatggcccggccagagtatcgcccacgaccc
gccaacccagctgacataggcaacttcattgatgataacctgaaggcagctgacaacgac
cccactgctcctccctacgactccctcctggtgtttgactatgaaggaggtggctctgag
gccggctccctcagctccctcaactcctccagctcaggagatgaccaggactacgatctc
cttcaacagtggggcccgcgcttcaagaagctgtctgacatgtacggcggaggagaggat
tga
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