Salvelinus namaycush (lake trout): 120024796
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Entry
120024796 CDS
T07522
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120024796
Enzymes [BR:
snh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120024796
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
120024796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
Prok-RING_4
Sina_ZnF
zf-TRAF
PDZ_Tricorn
U-box
zf-rbx1
TRAF3_RING
RING_XB3-XBAT31
LemA
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
120024796
NCBI-ProteinID:
XP_038825038
UniProt:
A0A8U0PI85
LinkDB
All DBs
Position
Sna2:20996732..21130359
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AA seq
1060 aa
AA seq
DB search
MGFELDRFKGAVDPDFKCNLCNKVLEDPLTTPCGHVFCASCVLPWVVQKSSCPVKCQRIS
TTELNHVLPLKNLILKLDIKCDNHARGCEKVVKLHHLAEHAEMCDYSPAKCRNKGCKEVL
NLKDMDAHMRESCDYRPVGICDSGCGLMLIHKEQKLDTHCCLKAMKAHNSALHGKVVNLD
KEFKKQSLKSSKREKSLLAQLSAVHNELQMTALKYQKKFTEYSARIDSLTRTLVPPCKGG
ETKNVTAILHREGGSLGFNIVGGRPCADDHNGTLNEGIFVSKIVEKGPTDKEGGLQIHDR
IMEVNGKDLSKATHDQAVEVFRTAKEPIMVQVLRRAPRPKPSIPASDTQVVDISTQTDIT
FQHIMALTKLPATAPVVAVLEQYLMPEEHSPGHEYFDPNDFLEGMQQEMDREELEYEEVD
LYRTNIQDKLGLTVCYRTDDEDETGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNR
EDAVALLTSEENQNVCLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRTDESTRNDESSEQENLGDDQTT
ASNTLGSCSRRKLTYSQDTLGSTDLPFSSESFISADYDHADFLGIPADECERFRELLELK
CQVRSVGGPHGLYCQSARAGRAEEGVDKELELLNEELHSIELECLNIVRAHKMQQLREQY
REAWMLHNSGFRNYNTSIDARRHELSDINELPEKSDKDSSSAYNTGESCRSTPLTLELSP
DNSLRRGEEIQGEAGAYSSAGLNNRILKPLLSPVQEADGPSRIRPSSSKESEFGLQAEEK
ERKLGESTHKLAQPRSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSLVSQGD
PVTPRDMLEPKKEWKVKIRSDGTRYITKRPIRDKLLKERALRIREERSGMTTDDDAFSEL
KIGRYWSKEERKQHAVRAKEQKQRREFMKQSRADCLKEQASLDDDKKEPNIIELSHKKMM
KKRNKKIFDNWMTIQELLTHGAKSPDGTRVYNSLLSVTTV
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagttggatcggtttaaaggggctgtggacccagattttaaatgcaattta
tgtaataaagttctagaagacccgctcactactccgtgtggtcacgtcttctgcgcaagc
tgtgtgctgccttgggttgtccagaaaagcagctgccccgtcaaatgtcaaaggatctcc
acgacagagctgaaccacgttctccctctgaaaaacctgattctgaagctggacataaag
tgtgacaaccatgccagaggctgtgaaaaagtggtaaagctgcatcatctagcagagcat
gccgagatgtgcgattactcaccggccaaatgcaggaataaaggatgcaaggaggtgctc
aatctgaaggacatggatgcccatatgcgcgaatcgtgtgattacagaccggtcgggata
tgcgacagtggatgtggcttgatgctcatccacaaagagcaaaaactagacacccattgc
tgtttgaaagccatgaaagcacataatagtgcattgcacgggaaggtggtcaacttggac
aaagagttcaagaagcaatcattgaaatcaagcaaaagagagaaatcacttcttgctcaa
ctctccgcggtgcacaatgagctacaaatgacagcgctgaagtatcagaagaaattcact
gaatacagtgcaaggatcgattcgctgactaggacccttgttcccccgtgcaagggcggg
gagacaaaaaacgtcacagccatccttcatcgggagggaggttctctgggcttcaacatc
gtgggaggacgaccatgtgcggacgaccataatggcactttgaatgaaggcatttttgta
tccaagatcgttgagaagggaccaacagacaaggagggaggccttcagatccacgacaga
ataatggaggtgaatgggaaggacctgtccaaggccacccatgaccaggcagtggaggtc
ttccgtacggccaaggagcccatcatggtccaggtgcttcgccgggccccccgccccaaa
ccctccatccctgcctcagacacccaggtggtagacatcagcacacagacagacatcacc
tttcaacacatcatggccctcaccaagctacctgccaccgcccccgtcgtggctgtgctg
gagcaatacctaatgcctgaggagcattcccctgggcacgagtactttgaccccaatgat
ttcctggagggcatgcagcaggagatggatcgagaggagctggagtatgaggaagtggat
ttgtacagaaccaacatccaggacaagcttggtttgactgtctgctacaggactgatgat
gaggacgagactgggatctatgtcagtgagattgacccaaacagcatcgctgcaaaggat
ggcaggatcagagagggagatagaattatccagatcaatggaattgagatccagaaccga
gaggatgctgtggctttgttgaccagtgaggagaatcagaatgtatgcctactggtagcc
agaccagagatccagctggatgagggttggatggatgacgacaggaatgacttcctggat
gacctccacatggacatgctggagcagcagcaccaccaggccatgcagttcactgccagc
atgctgcagcagaagaagcatgaggaggatggtggaacaacggacacagccaccctgttg
tccaaccaccacgagaaggacagtggggttggccgcaccgacgagagcacgcgcaccgac
gagagcacgcgcaacgacgagagctcggagcaggagaacctgggggatgaccagactaca
gcctccaacacactgggcagctgcagccgcaggaagctgacctacagccaggacaccctg
ggcagcactgacctgcctttcagtagtgagtccttcatctctgcagactacgaccatgct
gacttcctgggtatccccgccgatgagtgtgagcgcttccgagagctcctggagttgaag
tgccaggtgaggagcgtggggggcccccatggcctgtactgccagagtgccagggccgga
agggccgaagagggggtggacaaggagctggagctgctgaacgaggagctgcacagcatt
gagctggagtgcctcaacatcgtccgtgcccacaagatgcagcagctaagggagcagtat
cgcgaggcgtggatgctgcacaacagcggcttccgcaactacaacaccagcatcgatgcg
cgccgccacgagctctccgatattaacgagctgcccgagaagtcggacaaggacagctcc
agcgcctacaacactggagagagctgtcgcagcacccccctcaccctggagctgtcccca
gacaactccctccgaaggggggaagagatccagggcgaggccggggcctacagcagtgca
gggctcaacaacaggatcctcaagcccctgctgtctcctgtccaagaggctgatggcccc
agcagaatcaggccctcctcctctaaggagtctgagtttggcctgcaggcggaggagaag
gaacgtaagctgggagagtctactcacaagctggcccagccccgctccccgtacaaacat
gcccacatcccggcccatgcccagcactaccagagctacatgcagctgatccagcagaag
tctgccgtggagtacgcccagagccagatgagcctggtcagtctggtcagccaaggtgac
cctgtgacccccagagacatgctggagcccaagaaggagtggaaggtgaagatccgcagt
gatggcacacgctacatcaccaagaggcccatcagggacaagctgctgaaggagcgcgcc
ctgcgtatccgcgaggagcgcagcggcatgaccacagacgacgacgccttcagcgagctg
aagatcgggcggtactggagcaaagaggagaggaagcagcacgcggtgcgcgccaaggag
cagaagcagcgccgcgagttcatgaagcagagccgcgctgactgcctgaaggaacaggcc
agcctggatgacgacaagaaggagcccaatatcattgagctgagccacaaaaagatgatg
aaaaagaggaacaagaaaatctttgacaattggatgactatccaggaacttttaacccac
ggtgctaagtcgcctgacggcacgcgagtgtacaactccctcctgtctgtcaccacagtg
tag
DBGET
integrated database retrieval system
